RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 FAM72AQ5TYM5 149 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 FAM72DQ6L9T8 149 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 PRR23BQ6ZRT6 265 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 FAM72BQ86X60 149 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 TMEM25Q86YD3 366 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 MMAAQ8IVH4 418 aaKnown RBP10.46□□□□□ -0.73
COL6A3-205ENST00000392004 ZMIZ2Q8NF64 920 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 TTC17Q96AE7 1141 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 HDAC11Q96DB2 347 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 A0A0D9SEW6 157 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 SNX3O60493 162 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 STIP1P31948 543 aaKnown RBP10.46□□□□□ -0.73
COL6A3-205ENST00000392004 STK19P49842 368 aaPredicted RBP10.46□□□□□ -0.73
COL6A3-205ENST00000392004 NCALDP61601 193 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 Q6ZVU0 165 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 P2RY11Q96G91 374 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 PRKD2Q9BZL6 878 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 SFXN1Q9H9B4 322 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 CD84Q9UIB8 345 aa10.46□□□□□ -0.73
COL6A3-205ENST00000392004 WDR90Q96KV7 1748 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 FAM189BP81408 668 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 DSC2Q02487 901 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 GNA12Q03113 381 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 TRIP4Q15650 581 aaPredicted RBP10.46□□□□□ -0.74
COL6A3-205ENST00000392004 NAPEPLDQ6IQ20 393 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 STRADAQ7RTN6 431 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 SPATA21Q7Z572 469 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 NAT14Q8WUY8 206 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 ATXN2LQ8WWM7 1075 aaKnown RBP10.46□□□□□ -0.74
COL6A3-205ENST00000392004 PRCCQ92733 491 aaPredicted RBP10.46□□□□□ -0.74
COL6A3-205ENST00000392004 KHSRPQ92945 711 aaKnown RBP eCLIP10.46□□□□□ -0.74
COL6A3-205ENST00000392004 RNF38Q9H0F5 515 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.46□□□□□ -0.74
COL6A3-205ENST00000392004 AGO1Q9UL18 857 aaKnown RBP10.46□□□□□ -0.74
COL6A3-205ENST00000392004 ASB3Q9Y575 518 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 TTC3P53804 2025 aa10.46□□□□□ -0.74
COL6A3-205ENST00000392004 ANXA9O76027 345 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 VAPBO95292 243 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 MGAT1P26572 445 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 GARSP41250 739 aaKnown RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 MXRA7P84157 204 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 DLG2Q15700 870 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 AAK1Q2M2I8 961 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 ARMC12Q5T9G4 340 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 DUPD1Q68J44 220 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 PTCRAQ6ISU1 281 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 TIGD7Q6NT04 549 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 CEP128Q6ZU80 1094 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 TP53INP2Q8IXH6 220 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 EPS8L3Q8TE67 593 aaKnown RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 HLA-CQ95604 372 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 C8orf48Q96LL4 319 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 PPP1R36Q96LQ0 422 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 SLC46A2Q9BY10 475 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 ZNF334Q9HCZ1 680 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 PFDN4Q9NQP4 134 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 RAD54BQ9Y620 910 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 M0QZQ0 153 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 POLBP06746 335 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 ATF6P18850 670 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 ERVK-21P61565 698 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 FASTKD1Q53R41 847 aaKnown RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 FRA10AC1Q70Z53 315 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 C4orf33Q8N1A6 199 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 SPDYE1Q8NFV5 336 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 ARHGEF2Q92974 986 aaKnown RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 OSBPL1AQ9BXW6 950 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 GPR88Q9GZN0 384 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 POLR1EQ9GZS1 481 aaKnown RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 SEMA4AQ9H3S1 761 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 CWH43Q9H720 699 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 ETNK1Q9HBU6 452 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 KIAA1522Q9P206 1035 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 SLCO3A1Q9UIG8 710 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 SLC39A10Q9ULF5 831 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 CCL26Q9Y258 94 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 CRYL1Q9Y2S2 319 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 HS3ST4Q9Y661 456 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 DOCK5Q9H7D0 1870 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 C1orf232A0A0U1RR37 186 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 A0A1B0GVM2 712 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 TCAF2A6NFQ2 919 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 NCF1BA6NI72 391 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 C2orf81A6NN90 581 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 NCF1CA8MVU1 366 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 NDUFS2O75306 463 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 CLDN11O75508 207 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 F7P08709 466 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 NCF1P14598 390 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 MAPK9P45984 424 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 FOXD4Q12950 439 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 TSNAXIP1Q2TAA8 658 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 ZNF284Q2VY69 593 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 EML3Q32P44 896 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 PCDH19Q8TAB3 1148 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 DDX1Q92499 740 aaKnown RBP10.45□□□□□ -0.74
COL6A3-205ENST00000392004 HES6Q96HZ4 224 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 SPATA17Q96L03 361 aa10.45□□□□□ -0.74
COL6A3-205ENST00000392004 FAM96AQ9H5X1 160 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms