RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 VBP1P61758 197 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 TRIM32Q13049 653 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 FAM26FQ5R3K3 315 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 CCNJQ5T5M9 372 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 ATF7IP2Q5U623 682 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 KRT79Q5XKE5 535 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 DESI1Q6ICB0 168 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 LRRC55Q6ZSA7 311 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 ERMP1Q7Z2K6 904 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 SLC2A14Q8TDB8 520 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 GLT1D1Q96MS3 346 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 KLHL32Q96NJ5 620 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 FGFBP2Q9BYJ0 223 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 ZNF341Q9BYN7 854 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 TMEM260Q9NX78 707 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 SYBUQ9NX95 663 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 GLTPQ9NZD2 209 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 CNOT11Q9UKZ1 510 aaKnown RBP9.49□□□□□ -0.89
PTPRA-204ENST00000380393 IPPQ9Y573 584 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 ALG6Q9Y672 507 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 ISPDA4D126 451 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 USP17L3A6NCW0 530 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 USP17L4A6NCW7 530 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 CTDSP2O14595 271 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 CPNE3O75131 537 aaKnown RBP9.49□□□□□ -0.89
PTPRA-204ENST00000380393 NDST3O95803 873 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 IL10P22301 178 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 YIF1BQ5BJH7 314 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 CACHD1Q5VU97 1274 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 AGAP6Q5VW22 663 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 TATDN1Q6P1N9 297 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 USP17L1Q7RTZ2 530 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 GLYCTKQ8IVS8 523 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 CTAGE3PQ8IX95 158 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 AGAP4Q96P64 663 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 ANKRD60Q9BZ19 345 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 GANQ9H2C0 597 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 SSU72Q9NP77 194 aaKnown RBP9.49□□□□□ -0.89
PTPRA-204ENST00000380393 ASNSD1Q9NWL6 643 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.49□□□□□ -0.89
PTPRA-204ENST00000380393 ITGA11Q9UKX5 1188 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 RAD54BQ9Y620 910 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 LEUTXA8MZ59 168 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 NDUFS6O75380 124 aaKnown RBP9.49□□□□□ -0.89
PTPRA-204ENST00000380393 UGT2B4P06133 528 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 DPEP1P16444 411 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 PRDX5P30044 214 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 CSTF2P33240 577 aaKnown RBP eCLIP9.49□□□□□ -0.89
PTPRA-204ENST00000380393 SERPINB5P36952 375 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 SOX9P48436 509 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 NAB1Q13506 487 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 CALCRLQ16602 461 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 Q5BKY6 102 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 FSCBQ5H9T9 825 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 HMBOX1Q6NT76 420 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 ERAP2Q6P179 960 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 KCNK18Q7Z418 384 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 SLCO6A1Q86UG4 719 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 AMIGO1Q86WK6 493 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 CDH26Q8IXH8 852 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 PHC2Q8IXK0 858 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 MICU2Q8IYU8 434 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 DACH2Q96NX9 599 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 EBF4Q9BQW3 602 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 DTLQ9NZJ0 730 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 BCS1LQ9Y276 419 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 RPH3AQ9Y2J0 694 aaPredicted RBP9.49□□□□□ -0.89
PTPRA-204ENST00000380393 PCDHGA7Q9Y5G6 932 aa9.49□□□□□ -0.89
PTPRA-204ENST00000380393 COL1A1P02452 1464 aaPredicted RBP9.49□□□□□ -0.89
PTPRA-204ENST00000380393 COL24A1Q17RW2 1714 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 KDM3AQ9Y4C1 1321 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 RAB19A4D1S5 217 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 I3L521 148 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 E2F3O00716 465 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 SORBS3O60504 671 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 ENTPD3O75355 529 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 BMP4P12644 408 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 NR2F2P24468 414 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 ACAT1P24752 427 aaKnown RBP9.48□□□□□ -0.89
PTPRA-204ENST00000380393 IVDP26440 423 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 AXLP30530 894 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 HIBADHP31937 336 aaKnown RBP9.48□□□□□ -0.89
PTPRA-204ENST00000380393 ZNF124Q15973 351 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 ZNF544Q6NX49 715 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 CHSY1Q86X52 802 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 BHLHE22Q8NFJ8 381 aaPredicted RBP9.48□□□□□ -0.89
PTPRA-204ENST00000380393 HDAC11Q96DB2 347 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 DYNLL2Q96FJ2 89 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 APOPT1Q96IL0 206 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 SERPINI1Q99574 410 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 VRTNQ9H8Y1 702 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 SDHAF3Q9NRP4 125 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 IL37Q9NZH6 218 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 PHGDHO43175 533 aaKnown RBP9.48□□□□□ -0.89
PTPRA-204ENST00000380393 GREM1O60565 184 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 PRKD3O94806 890 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 GRB10Q13322 594 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 NFIL3Q16649 462 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 BRMS1LQ5PSV4 323 aa9.48□□□□□ -0.89
PTPRA-204ENST00000380393 CHST15Q7LFX5 561 aaPredicted RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms