RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 SULT2A1Q06520 285 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 ZYG11AQ6WRX3 759 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 SETD3Q86TU7 594 aaPredicted RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 TMEM135Q86UB9 458 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 DNERQ8NFT8 737 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 CENPIQ92674 756 aaPredicted RBP13.89□□□□□ -0.19
USP49-201ENST00000373006 COPS5Q92905 334 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 ISL2Q96A47 359 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 ASB9Q96DX5 294 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 TRPC7Q9HCX4 862 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 INIPQ9NRY2 104 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 GINS2Q9Y248 185 aa13.89□□□□□ -0.19
USP49-201ENST00000373006 DLX3O60479 287 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 TADA2AO75478 443 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 TIPRLO75663 272 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 TOMM70O94826 608 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 MT-CO1P00395 513 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 CAPNS1P04632 268 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 NSUN2Q08J23 767 aaKnown RBP eCLIP13.88□□□□□ -0.19
USP49-201ENST00000373006 NME3Q13232 169 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 DCAF6Q58WW2 860 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 CARM1Q86X55 608 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 RNF139Q8WU17 664 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 SLCO4A1Q96BD0 722 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 FAM167AQ96KS9 214 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 SLC39A3Q9BRY0 314 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 PDZD7Q9H5P4 517 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 PRORSD1PA6NEY8 169 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 PGK2P07205 417 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 GNAO1P09471 354 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 ARF4P18085 180 aaPredicted RBP13.88□□□□□ -0.19
USP49-201ENST00000373006 NMBRP28336 390 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 SULT1E1P49888 294 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 TXNL4AP83876 142 aaKnown RBP13.88□□□□□ -0.19
USP49-201ENST00000373006 CREB5Q02930 508 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 ZBTB49Q6ZSB9 765 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 DEFB106AQ8N104 65 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 TSNARE1Q96NA8 513 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 GPR20Q99678 358 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 OSBPL11Q9BXB4 747 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 ASB7Q9H672 318 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 GTSE1Q9NYZ3 720 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 XPR1Q9UBH6 696 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 SFMBT1Q9UHJ3 866 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 PADI4Q9UM07 663 aa13.88□□□□□ -0.19
USP49-201ENST00000373006 FER1L6Q2WGJ9 1857 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 NEMP2A6NFY4 417 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 ZNF487B1APH4 448 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 ZBTB24O43167 697 aaPredicted RBP13.87□□□□□ -0.19
USP49-201ENST00000373006 ALDH3B2P48448 385 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 GMPSP49915 693 aaPredicted RBP13.87□□□□□ -0.19
USP49-201ENST00000373006 KPNA1P52294 538 aaPredicted RBP13.87□□□□□ -0.19
USP49-201ENST00000373006 SLC41A1Q8IVJ1 513 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.87□□□□□ -0.19
USP49-201ENST00000373006 FZD10Q9ULW2 581 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 CDC14AQ9UNH5 594 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 CROCCQ5TZA2 2017 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 TIMM44O43615 452 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 DDHD2O94830 711 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 VTNP04004 478 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 COL6A2P12110 1019 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 CTBSQ01459 385 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 RHDQ02161 417 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 HMBOX1Q6NT76 420 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 SLC26A9Q7LBE3 791 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 PSTKQ8IV42 348 aaKnown RBP13.87□□□□□ -0.19
USP49-201ENST00000373006 ALDH16A1Q8IZ83 802 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 CNTD1Q8N815 330 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 RANBP9Q96S59 729 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 C1QTNF1Q9BXJ1 281 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 AS3MTQ9HBK9 375 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 HOXC10Q9NYD6 342 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 ANK1P16157 1881 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 SAC3D1A6NKF1 404 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 SOCS2O14508 198 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 HTRA2O43464 458 aaPredicted RBP13.87□□□□□ -0.19
USP49-201ENST00000373006 H2AFYO75367 372 aaKnown RBP13.87□□□□□ -0.19
USP49-201ENST00000373006 GLUD2P49448 558 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 PPP1R3AQ16821 1122 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 AGKQ53H12 422 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 ZNF786Q8N393 782 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 BBS5Q8N3I7 341 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 FIBCD1Q8N539 461 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 KDM1BQ8NB78 822 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 NXNL1Q96CM4 212 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 MAML3Q96JK9 1138 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 SPATA33Q96N06 139 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 CAMKK2Q96RR4 588 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 CORO1BQ9BR76 489 aa13.87□□□□□ -0.19
USP49-201ENST00000373006 CNOT11Q9UKZ1 510 aaKnown RBP13.87□□□□□ -0.19
USP49-201ENST00000373006 ZNF839A8K0R7 811 aa13.86□□□□□ -0.19
USP49-201ENST00000373006 FAM72CH0Y354 149 aa13.86□□□□□ -0.19
USP49-201ENST00000373006 NRP1O14786 923 aa13.86□□□□□ -0.19
USP49-201ENST00000373006 AKAP10O43572 662 aa13.86□□□□□ -0.19
USP49-201ENST00000373006 CABYRO75952 493 aa13.86□□□□□ -0.19
USP49-201ENST00000373006 SLC35E2BP0CK96 405 aa13.86□□□□□ -0.19
USP49-201ENST00000373006 LMO2P25791 158 aa13.86□□□□□ -0.19
USP49-201ENST00000373006 PTPN3P26045 913 aa13.86□□□□□ -0.19
USP49-201ENST00000373006 CTBP1Q13363 440 aa13.86□□□□□ -0.19
USP49-201ENST00000373006 FAM72AQ5TYM5 149 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms