RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 GRK4P32298 578 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 SLC18A2Q05940 514 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 CDH17Q12864 832 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 SLC9A4Q6AI14 798 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 NEPROQ6NW34 567 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 SLC26A9Q7LBE3 791 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 RELL1Q8IUW5 271 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 OR6K2Q8NGY2 324 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 PTCD3Q96EY7 689 aaKnown RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 FCRL2Q96LA5 508 aaPredicted RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 BRD8Q9H0E9 1235 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 S100A14Q9HCY8 104 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 ZDHHC2Q9UIJ5 367 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 PAIP2BQ9ULR5 123 aaKnown RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 RNASEH1O60930 286 aaKnown RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 SIX3O95343 332 aaPredicted RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 THRAP10827 490 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 DARSP14868 501 aaKnown RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 CKMT2P17540 419 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 NR4A1P22736 598 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 RPL14P50914 215 aaKnown RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 RBM20Q5T481 1227 aaKnown RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 PHC3Q8NDX5 983 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 HDAC10Q969S8 669 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 QKIQ96PU8 341 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP1-201ENST00000339950 APOL5Q9BWW9 433 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 DUSP16Q9BY84 665 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 GMPR2Q9P2T1 348 aaKnown RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 WARS2Q9UGM6 360 aaKnown RBP12.1□□□□□ -0.47
USP1-201ENST00000339950 RREB1Q92766 1687 aa12.1□□□□□ -0.47
USP1-201ENST00000339950 NUMA1Q14980 2115 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 GNGT2O14610 69 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 TIPRLO75663 272 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 GABBR2O75899 941 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 CLIC3O95833 236 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 GUCA1CO95843 209 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 FGF3P11487 239 aaPredicted RBP12.09□□□□□ -0.47
USP1-201ENST00000339950 UGT1A6P19224 532 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 CHRM3P20309 590 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 GRIA3P42263 894 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 NR2C2P49116 596 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 ZNF157P51786 506 aaPredicted RBP12.09□□□□□ -0.47
USP1-201ENST00000339950 RBBP7Q16576 425 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 PPP1R3AQ16821 1122 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 RAP1GAP2Q684P5 730 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 CDCA2Q69YH5 1023 aaPredicted RBP12.09□□□□□ -0.47
USP1-201ENST00000339950 OVOS1Q6IE37 1185 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 CLEC20AQ6ZU45 233 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 TAC4Q86UU9 113 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 PIM3Q86V86 326 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 DSELQ8IZU8 1212 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 ARHGAP18Q8N392 663 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 ARL10Q8N8L6 244 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 SLC16A10Q8TF71 515 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 CPNE1Q99829 537 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 EFCAB1Q9HAE3 211 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 IPO11Q9UI26 975 aaKnown RBP12.09□□□□□ -0.47
USP1-201ENST00000339950 EFR3BQ9Y2G0 817 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 AHDC1Q5TGY3 1603 aaPredicted RBP12.09□□□□□ -0.47
USP1-201ENST00000339950 TCRBV5S1A1TA0A578 114 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 FZD9O00144 591 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 TIMM44O43615 452 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 PAMP19021 973 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 YWHAQP27348 245 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 GSSP48637 474 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 ECT2LQ008S8 904 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 FASTKQ14296 549 aaKnown RBP12.09□□□□□ -0.47
USP1-201ENST00000339950 GK3PQ14409 553 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 SLC44A4Q53GD3 710 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 THAP11Q96EK4 314 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 ZBED3Q96IU2 234 aaPredicted RBP12.09□□□□□ -0.47
USP1-201ENST00000339950 C12orf42Q96LP6 360 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 ADAM2Q99965 735 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 UPF3AQ9H1J1 476 aaKnown RBP12.09□□□□□ -0.47
USP1-201ENST00000339950 ABHD16BQ9H3Z7 469 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 GALNT8Q9NY28 637 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 ADAMTS6Q9UKP5 1117 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 TTC3P53804 2025 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 DOCK5Q9H7D0 1870 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 SLC12A8A0AV02 714 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 LRRC14BA6NHZ5 514 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 UBDO15205 165 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 FAM189A1O60320 539 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 FOXD2O60548 495 aaPredicted RBP12.09□□□□□ -0.47
USP1-201ENST00000339950 VCLP18206 1134 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 PSEN2P49810 448 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 CDH15P55291 814 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 WASHC5Q12768 1159 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 PSMD5Q16401 504 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 GPR158Q5T848 1215 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 TMEM110Q86TL2 294 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 MFN1Q8IWA4 741 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 NPLOC4Q8TAT6 608 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 TRPC4APQ8TEL6 797 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 TMEM79Q9BSE2 394 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 MID1IP1Q9NPA3 183 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 NDFIP2Q9NV92 336 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 FBXO5Q9UKT4 447 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 CNTN6Q9UQ52 1028 aa12.09□□□□□ -0.47
USP1-201ENST00000339950 NME7Q9Y5B8 376 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms