RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 KIAA1958Q8N8K9 716 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 GDPD5Q8WTR4 605 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 RAPGEF5Q92565 580 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 RORBQ92753 470 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 C17orf62Q9BQA9 187 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 KIFC1Q9BW19 673 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ARHGAP39Q9C0H5 1083 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TMEM168Q9H0V1 697 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 NSUN3Q9H649 340 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PRMT7Q9NVM4 692 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SLC45A1Q9Y2W3 748 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TRAF6Q9Y4K3 522 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PCDHA10Q9Y5I2 948 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SUPT3HB4E1H0 165 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 GATBO75879 557 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 RARGP13631 454 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 C6P13671 934 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 GNL1P36915 607 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 GRIA1P42261 906 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 NR4A2P43354 598 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 MTTPP55157 894 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 HNRNPDQ14103 355 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 XKR4Q5GH76 650 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 CCDC137Q6PK04 289 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 MMGT1Q8N4V1 131 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 BHLHE22Q8NFJ8 381 aaPredicted RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 NLGN2Q8NFZ4 835 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 RNF217Q8TC41 542 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 LRRC20Q8TCA0 184 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SCYL1Q96KG9 808 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PANX3Q96QZ0 392 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 MCCC2Q9HCC0 563 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 EXOSC4Q9NPD3 245 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TLR9Q9NR96 1032 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ARHGEF38Q9NXL2 777 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PCDHB4Q9Y5E5 795 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TRPV2Q9Y5S1 764 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 NCOR1O75376 2440 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 EVPLQ92817 2033 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SMIM22K7EJ46 135 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PRPF4O43172 522 aaKnown RBP eCLIP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 DUSP11O75319 330 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ULK1O75385 1050 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PGM3O95394 542 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 GJB6O95452 261 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 USP17L7P0C7H9 530 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 UMPSP11172 480 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TPH1P17752 444 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 AGXTP21549 392 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 SAT1P21673 171 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 TYK2P29597 1187 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 AXLP30530 894 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 RPL21P46778 160 aaKnown RBP3.33□□□□□ -1.88
CSMD3-202ENST00000339701 MAPKAPK2P49137 400 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 DLG1Q12959 904 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PKP1Q13835 747 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 DSG2Q14126 1118 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PTPN20Q4JDL3 420 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 EPC2Q52LR7 807 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 FAM171A1Q5VUB5 890 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 UBALD2Q8IYN6 164 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 KCTD6Q8NC69 237 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ZFP28Q8NHY6 868 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 RDH12Q96NR8 316 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 PDE11AQ9HCR9 933 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF358Q9NW07 568 aa3.33□□□□□ -1.88
CSMD3-202ENST00000339701 STRCP1A6NGW2 1772 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 SLC27A2O14975 620 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 SGTAO43765 313 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 LRCH4O75427 683 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 KRT33AO76009 404 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CCNE2O96020 404 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FASP25445 335 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 RFC5P40937 340 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 DMC1Q14565 340 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF235Q14590 738 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 MFSD10Q14728 455 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CCDC142Q17RM4 750 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 KCNT1Q5JUK3 1230 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ARHGEF19Q8IW93 802 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 GOLM1Q8NBJ4 401 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CNOT6LQ96LI5 555 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FRMD6Q96NE9 622 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 AIF1LQ9BQI0 150 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PABPC3Q9H361 631 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PNPLA8Q9NP80 782 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 NECTIN3Q9NQS3 549 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF112Q9UJU3 913 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PNMA8BQ9ULN7 279 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 VPS4AQ9UN37 437 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PLCL2Q9UPR0 1127 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 MEMO1Q9Y316 297 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FRMPD4Q14CM0 1322 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CYP3A7-CYP3A51PA0A087WV96 503 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FAM170AA1A519 330 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 H7C0C1 242 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 TNFRSF10AO00220 468 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 HAT1O14929 419 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 TRIM66O15016 1216 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FOXN1O15353 648 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms