RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 LMNAP02545 664 aaKnown RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 PYGBP11216 843 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 TKTP29401 623 aaKnown RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 POLD2P49005 469 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 FAM189BP81408 668 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 DSC1Q08554 894 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 INO80DQ53TQ3 878 aaPredicted RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 MARCH8Q5T0T0 291 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 LLGL2Q6P1M3 1020 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 KLHDC10Q6PID8 442 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 MAGEC3Q8TD91 643 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 ATXN2LQ8WWM7 1075 aaKnown RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 OR8D1Q8WZ84 308 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 ELMO3Q96BJ8 720 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 ATXN7L3BQ96GX2 97 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 NECTIN4Q96NY8 510 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 TBL1YQ9BQ87 522 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 TM6SF2Q9BZW4 377 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 WWOXQ9NZC7 414 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 BAZ2AQ9UIF9 1905 aaKnown RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 PPEF2O14830 753 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 USP12O75317 370 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 IPO13O94829 963 aaKnown RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 ATP5F1P24539 256 aaPredicted RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 MGAT1P26572 445 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 HTR1BP28222 390 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 PHEXP78562 749 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SOX4Q06945 474 aaPredicted RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SEMA5AQ13591 1074 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 UPP1Q16831 310 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 GPR33Q49SQ1 333 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SLC8B1Q6J4K2 584 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 LRRC8BQ6P9F7 803 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SLC39A5Q6ZMH5 540 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 OTOP3Q7RTS5 596 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 C7orf61Q8IZ16 206 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SNX19Q92543 992 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 N4BP2L2Q92802 583 aaPredicted RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 UBE2E3Q969T4 207 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 PIGVQ9NUD9 493 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 TDP1Q9NUW8 608 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 E2F8A0AVK6 867 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SLC38A8A6NNN8 435 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 ANGPT2O15123 496 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 KATNA1O75449 491 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 DGKAP23743 735 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 MAPK1P28482 360 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 GRK3P35626 688 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 GSCP56915 257 aaPredicted RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SKOR1P84550 965 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 NSUN2Q08J23 767 aaKnown RBP eCLIP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 XKR4Q5GH76 650 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SDHAF4Q5VUM1 108 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 FBXL22Q6P050 247 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 OSTM1Q86WC4 334 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 FAM126BQ8IXS8 530 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 RBFAQ8N0V3 343 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 IRF7Q92985 503 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 UBR2Q8IWV8 1755 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 ITGB4P16144 1822 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 F5H423 210 aaPredicted RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 GPR32O75388 356 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 GJA8P48165 433 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 PPIDQ08752 370 aaKnown RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 PTPRNQ16849 979 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 RNASEH2BQ5TBB1 312 aaKnown RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 PLPP4Q5VZY2 271 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 AFTPHQ6ULP2 937 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 UNC5AQ6ZN44 842 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 PCDH20Q8N6Y1 951 aaKnown RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 OR52K1Q8NGK4 314 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 CENPTQ96BT3 561 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 LRIG1Q96JA1 1093 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 C1orf74Q96LT6 269 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SLC2A11Q9BYW1 496 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 CD274Q9NZQ7 290 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SCN7AQ01118 1682 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 TJP1Q07157 1748 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 C15orf38-AP3S2A0A0A6YYH1 394 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 FAM237BA0A1B0GVD1 139 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 RAD51BO15315 384 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 TSPAN3O60637 253 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 FGF18O76093 207 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 ENDOD1O94919 500 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 BMPR1AP36894 532 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 ANKRD20A4Q4UJ75 823 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 FAM26DQ5JW98 314 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 MSANTD2Q6P1R3 559 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 TPGS1Q6ZTW0 290 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 ARPINQ7Z6K5 226 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 TDRPQ86YL5 185 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 ASPSCR1Q9BZE9 553 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 AHSPQ9NZD4 102 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 CTNNAL1Q9UBT7 734 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 E9PAM4 449 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 WEE1P30291 646 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 HALP42357 657 aa6.94□□□□□ -1.3
SF3B1-201ENST00000335508 PLEKHG4Q58EX7 1191 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms