RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 TAF13Q15543 124 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 TXNDC11Q6PKC3 985 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 C16orf86Q6ZW13 317 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 SRFBP1Q8NEF9 429 aaKnown RBP14.44□□□□□ -0.1
COL7A1-201ENST00000328333 NECTIN3Q9NQS3 549 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 PCDHGA3Q9Y5H0 932 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 SMCO3A2RU48 225 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 METTL18O95568 372 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 NME5P56597 212 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 BPIFB6Q8NFQ5 453 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 TRIT1Q9H3H1 467 aaKnown RBP14.44□□□□□ -0.1
COL7A1-201ENST00000328333 G3V2T6 193 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 M0QYT0 321 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 FAM153BP0C7A2 387 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 ATF4P18848 351 aaPredicted RBP14.44□□□□□ -0.1
COL7A1-201ENST00000328333 GPR1P46091 355 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 HERVK_113P62684 666 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 PLD1Q13393 1074 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 INO80EQ8NBZ0 244 aaPredicted RBP14.44□□□□□ -0.1
COL7A1-201ENST00000328333 ATG4AQ8WYN0 398 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 TSPAN18Q96SJ8 248 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 CYP4F12Q9HCS2 524 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 DPP3Q9NY33 737 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 PSMD13Q9UNM6 376 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 CLDN25C9JDP6 229 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 MYBPC3Q14896 1274 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 PERM1Q5SV97 790 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 UBE2Q1Q7Z7E8 422 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 GPSM1Q86YR5 675 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 CD320Q9NPF0 282 aa14.44□□□□□ -0.1
COL7A1-201ENST00000328333 DDX3XO00571 662 aaKnown RBP eCLIP14.43□□□□□ -0.1
COL7A1-201ENST00000328333 SLC26A2P50443 739 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 PPM1LQ5SGD2 360 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 NUP205Q92621 2012 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 TULP3O75386 442 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 TTLL6Q8N841 843 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 VMP1Q96GC9 406 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 BBS4Q96RK4 519 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 ARMCX1Q9P291 453 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 M0QX08 132 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 HBP1O60381 514 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 PAEPP09466 180 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 OMPP47874 163 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 RASAL3Q86YV0 1011 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 TNFAIP8L1Q8WVP5 186 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 CGRRF1Q99675 332 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 MEMO1Q9Y316 297 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 AP3D1O14617 1153 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 CPSF4O95639 269 aaKnown RBP14.43□□□□□ -0.1
COL7A1-201ENST00000328333 PAX3P23760 479 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 LYPLAL1Q5VWZ2 237 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 LIPMQ5VYY2 423 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 IL27RAQ6UWB1 636 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 SEMA6AQ9H2E6 1030 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 BCS1LQ9Y276 419 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 CPT1AP50416 773 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 EPC2Q52LR7 807 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 CNSTQ6PJW8 725 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 TMC7Q7Z402 723 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 PQLC1Q8N2U9 271 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 NKAPQ8N5F7 415 aaKnown RBP14.43□□□□□ -0.1
COL7A1-201ENST00000328333 TRPV5Q9NQA5 729 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 METTL3Q86U44 580 aaKnown RBP14.43□□□□□ -0.1
COL7A1-201ENST00000328333 PTCD2Q8WV60 388 aaKnown RBP14.43□□□□□ -0.1
COL7A1-201ENST00000328333 MINPP1Q9UNW1 487 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 MAGI3Q5TCQ9 1506 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 ZNF37AP17032 561 aaPredicted RBP14.43□□□□□ -0.1
COL7A1-201ENST00000328333 MAPK8P45983 427 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 NAT14Q8WUY8 206 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 CRELD1Q96HD1 420 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 ACOX2Q99424 681 aa14.43□□□□□ -0.1
COL7A1-201ENST00000328333 ARF5P84085 180 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 MAPKAPK3Q16644 382 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 LRRC38Q5VT99 294 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 LMBRD2Q68DH5 695 aaPredicted RBP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 MTSS1LQ765P7 747 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 C18orf25Q96B23 403 aaPredicted RBP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 RASSF1Q9NS23 344 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 VPS4AQ9UN37 437 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 RGS10O43665 173 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 STOMP27105 288 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 SSTR3P32745 418 aaPredicted RBP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 TRIM28Q13263 835 aaKnown RBP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 CAMKK1Q8N5S9 505 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 ZNF614Q8N883 585 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 TUBGCP5Q96RT8 1024 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 OXCT2Q9BYC2 517 aaPredicted RBP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 CATSPERZQ9NTU4 200 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 DHRS7Q9Y394 339 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 ASS1P00966 412 aaKnown RBP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 HALP42357 657 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 MFSD7Q6UXD7 560 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.42□□□□□ -0.1
COL7A1-201ENST00000328333 POU5F2Q8N7G0 328 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 CDYL2Q8N8U2 506 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 SLC9A6Q92581 669 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 HPSEQ9Y251 543 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 QSOX1O00391 747 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 PITPNAQ00169 270 aa14.42□□□□□ -0.1
COL7A1-201ENST00000328333 ZNHIT3Q15649 155 aaPredicted RBP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms