RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ZNF304Q9HCX3 659 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.02□□□□□ -0.17
CSPG4-201ENST00000308508 PRODHO43272 600 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 ERCC2P18074 760 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 RPL19P84098 196 aaKnown RBP14.02□□□□□ -0.17
CSPG4-201ENST00000308508 CYP2A13Q16696 494 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 PFKFB4Q16877 469 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 MTMR8Q96EF0 704 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 PLA2G4CQ9UP65 541 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 OR5F1O95221 314 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 DGKAP23743 735 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 PTGS2P35354 604 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF135P52742 658 aaPredicted RBP14.02□□□□□ -0.17
CSPG4-201ENST00000308508 ADCY10Q96PN6 1610 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 MAP3K4Q9Y6R4 1608 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 FAM237BA0A1B0GVD1 139 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 C2CD2LO14523 706 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 GPR182O15218 404 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 RLN1P04808 185 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 LYNP07948 512 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 AP3S2P59780 193 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 RRP1BQ14684 758 aaKnown RBP14.02□□□□□ -0.17
CSPG4-201ENST00000308508 RFT1Q96AA3 541 aa14.02□□□□□ -0.17
CSPG4-201ENST00000308508 SAMHD1Q9Y3Z3 626 aaKnown RBP14.02□□□□□ -0.17
CSPG4-201ENST00000308508 PTPN1P18031 435 aaKnown RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 UGT1A5P35504 534 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF268Q14587 947 aaPredicted RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 CBWD6Q4V339 395 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 CBWD1Q9BRT8 395 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 MED28Q9H204 178 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 RASSF1Q9NS23 344 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ARL15Q9NXU5 204 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 VPS4AQ9UN37 437 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 TET3O43151 1660 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 UGT2B11O75310 529 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ADSLP30566 484 aaPredicted RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 DDR1Q08345 913 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 PTPAQ15257 358 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 PIH1D2Q8WWB5 315 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 SLC47A1Q96FL8 570 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 FBXO44Q9H4M3 255 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ELL3Q9HB65 397 aaPredicted RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 AASDHPPTQ9NRN7 309 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 C17orf102A2RUQ5 167 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 CKMP06732 381 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 RARAP10276 462 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ZNHIT3Q15649 155 aaPredicted RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 CRTC3Q6UUV7 619 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 SCAIQ8N9R8 606 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 SENP2Q9HC62 589 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 KLK14Q9P0G3 267 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 DNPEPQ9ULA0 475 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 BARX2Q9UMQ3 279 aaPredicted RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 HPSEQ9Y251 543 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 RBAK-RBAKDNI3L0D1 243 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 APOC4-APOC2K7ER74 178 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 CASKO14936 926 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 APOC2P02655 101 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 LTA4HP09960 611 aaKnown RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 SPIBQ01892 262 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 RABL6Q3YEC7 729 aaPredicted RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ATP13A5Q4VNC0 1218 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ZFP28Q8NHY6 868 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 DNAJB14Q8TBM8 379 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ACMSDQ8TDX5 336 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 MTFMTQ96DP5 389 aaKnown RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ZW10O43264 779 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ENDOD1O94919 500 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 CCNE2O96020 404 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 PRLP01236 227 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 TPH1P17752 444 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ARF4P18085 180 aaPredicted RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 MAGEA2P43356 314 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 TKTL1P51854 596 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 GALNT18Q6P9A2 607 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 PRR23BQ6ZRT6 265 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 UTS2BQ765I0 119 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ZC3H7AQ8IWR0 971 aaKnown RBP14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF180Q9UJW8 692 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ANTXR2P58335 489 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF484Q5JVG2 852 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 SELENOMQ8WWX9 145 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 PPP3R2Q96LZ3 170 aa14.01□□□□□ -0.17
CSPG4-201ENST00000308508 TSPAN4O14817 238 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 STAG3L1P0CL83 205 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 OR1E1P30953 314 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 NPTX2P47972 431 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 SCRN3Q0VDG4 424 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 CWF19L1Q69YN2 538 aaKnown RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 CD101Q93033 1021 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 SLC12A8A0AV02 714 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 METTL18O95568 372 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 ADAM17P78536 824 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 RALGDSQ12967 914 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 SNAPC2Q13487 334 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 SULT1C3Q6IMI6 304 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 PTCHD4Q6ZW05 846 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF720Q7Z2F6 126 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 KATNAL2Q8IYT4 538 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 TBC1D24Q9ULP9 559 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms