RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 SEMA3GQ9NS98 782 aa4.07□□□□□ -1.76
USH2A-201ENST00000307340 PI4K2BG5E9Z4 385 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 HCAR3P49019 387 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 PSMD4P55036 377 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 OTOP1Q7RTM1 612 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 PROX1Q92786 737 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 AURKBQ96GD4 344 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 HAPLN3Q96S86 360 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TMEM184CQ9NVA4 438 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ZNF358Q9NW07 568 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TAS2R7Q9NYW3 318 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 PACSIN3Q9UKS6 424 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 LDLRP01130 860 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 QRICH1Q2TAL8 776 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 CAMK1GQ96NX5 476 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 FAM111AQ96PZ2 611 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SH3GL2Q99962 352 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RPAP3Q9H6T3 665 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 AURKCQ9UQB9 309 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 C15orf41Q9Y2V0 281 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 MANSC4A6NHS7 340 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 PLSCR1O15162 318 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ATP5F1P24539 256 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 PTPN11Q06124 597 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 NTRK3Q16288 839 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 MYLK4Q86YV6 388 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 TMC8Q8IU68 726 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 PGAM4Q8N0Y7 254 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 BRSK1Q8TDC3 778 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TMEM159Q96B96 161 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 KIF12Q96FN5 646 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SETD4Q9NVD3 440 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 DNAJC28Q9NX36 388 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RAB23Q9ULC3 237 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TNFSF13BQ9Y275 285 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 PCDHB7Q9Y5E2 793 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 EFCAB10A6NFE3 127 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 NAT2P11245 290 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 S100A7P31151 101 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 CCNFP41002 786 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 GRIA1P42261 906 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RPL14P50914 215 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 PPIDQ08752 370 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 TWF1Q12792 350 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 FSCN1Q16658 493 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 BBS9Q3SYG4 887 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TMEM119Q4V9L6 283 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ZC3H12BQ5HYM0 836 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 FBXO42Q6P3S6 717 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RAD9BQ6WBX8 426 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 OR6P1Q8NGX9 317 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 BHMTQ93088 406 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 ACDQ96AP0 544 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 CXorf40BQ96DE9 158 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 NUDT12Q9BQG2 462 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TTYH1Q9H313 450 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 MYOZ2Q9NPC6 264 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 HSFX1Q9UBD0 423 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SYN3O14994 580 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 FTCDO95954 541 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 MAPK3P27361 379 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 PRKCEQ02156 737 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 CYP24A1Q07973 514 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TRMT11Q7Z4G4 463 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 FAM126BQ8IXS8 530 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 PPTC7Q8NI37 304 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RNF146Q9NTX7 359 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 CCDC59Q9P031 241 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 ZNF624Q9P2J8 865 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 TRIM64BA6NI03 449 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 CDC42P60953 191 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SNRPD1P62314 119 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 ATP13A5Q4VNC0 1218 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 USP50Q70EL3 339 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 CAPSLQ8WWF8 208 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 C9orf72Q96LT7 481 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 PKD2L1Q9P0L9 805 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 CLEC11AQ9Y240 323 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 STAU1O95793 577 aaKnown RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 PRKAR1AP10644 381 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 IMPDH2P12268 514 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TRAF3Q13114 568 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 GALNT3Q14435 633 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 NFE2L1Q14494 772 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 NCAPHQ15003 741 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 FAM46CQ5VWP2 391 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TRIQKQ629K1 86 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 AFTPHQ6ULP2 937 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 RNF149Q8NC42 400 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TRIM2Q9C040 744 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 EXD2Q9NVH0 621 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 BTBD3Q9Y2F9 522 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SNAP23O00161 211 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 SLC28A1O00337 649 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 TRPA1O75762 1119 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 EPB42P16452 691 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 CDH5P33151 784 aaPredicted RBP4.06□□□□□ -1.76
USH2A-201ENST00000307340 GPR15P49685 360 aa4.06□□□□□ -1.76
USH2A-201ENST00000307340 GSCP56915 257 aaPredicted RBP4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms