RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ILF2Q12905 390 aaKnown RBP9.98□□□□□ -0.81
COL6A3-201ENST00000295550 FKBP1CQ5VVH2 108 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 CLYBLQ8N0X4 340 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 ZHX1-C8orf76Q96EF9 292 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 PRDM16Q9HAZ2 1276 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 CLN6Q9NWW5 311 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 PFDN2Q9UHV9 154 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 WWP2O00308 870 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 EPN2O95208 641 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 GLP2RO95838 553 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 ATF4P18848 351 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-201ENST00000295550 CSHL1Q14406 222 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 CCSAPQ6IQ19 270 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-201ENST00000295550 C17orf50Q8WW18 174 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 HSD17B14Q9BPX1 270 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 LAMB1P07942 1786 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 A0A0X1KG70 313 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 S100GP29377 79 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 RTP1P59025 263 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 DDR1Q08345 913 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 C12orf50Q8NA57 414 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-201ENST00000295550 BHMTQ93088 406 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 OPLAHO14841 1288 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 IDH2P48735 452 aaKnown RBP9.98□□□□□ -0.81
COL6A3-201ENST00000295550 SOX10P56693 466 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 TOP3AQ13472 1001 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-201ENST00000295550 ARSHQ5FYA8 562 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 TTC7BQ86TV6 843 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 COX4I2Q96KJ9 171 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 ZNF112Q9UJU3 913 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 TUBGCP6Q96RT7 1819 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 MAGEB16A2A368 324 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 HACD1B0YJ81 288 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 KBTBD13C9JR72 458 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 PROCP04070 461 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 ADRA1DP25100 572 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 ADSSP30520 456 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 SMCO1Q147U7 214 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 SLC15A2Q16348 729 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 PDK4Q16654 411 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 POLNQ7Z5Q5 900 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 RNF148Q8N7C7 305 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 Q96MT0 163 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 HACL1Q9UJ83 578 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 GMPSP49915 693 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-201ENST00000295550 BMPR2Q13873 1038 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 ALG3Q92685 438 aa9.98□□□□□ -0.81
COL6A3-201ENST00000295550 MTG1Q9BT17 334 aaPredicted RBP9.98□□□□□ -0.81
COL6A3-201ENST00000295550 SNAP91O60641 907 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 CRTAMO95727 393 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 DBTP11182 482 aaKnown RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 CDC42P60953 191 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 TYSND1Q2T9J0 566 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 DDIT4Q9NX09 232 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 SORCS3Q9UPU3 1222 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 BAIAP2Q9UQB8 552 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 MRASO14807 208 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 TFECO14948 347 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 TGFB3P10600 412 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ODC1P11926 461 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 BPIFB6Q8NFQ5 453 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 CDRT15Q96T59 188 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 FICDQ9BVA6 458 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 WDR41Q9HAD4 459 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 GGA3Q9NZ52 723 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 TRPM5Q9NZQ8 1165 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ITGALP20701 1170 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 MAGEA2P43356 314 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 FMO1Q01740 532 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 BNC1Q01954 994 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 MAGEE2Q8TD90 523 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 EEF1AKMT1Q8WVE0 214 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 PHF21BQ96EK2 531 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 DPY30Q9C005 99 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ANAPC2Q9UJX6 822 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 WDR27A2RRH5 827 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 LOC110117498-PIK3R3F6TDL0 507 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 TSPAN4O14817 238 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 SEZ6Q53EL9 994 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 METTL7BQ6UX53 244 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 PHF13Q86YI8 300 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 SLC25A23Q9BV35 468 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ADGRE3Q9BY15 652 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ARHGAP28Q9P2N2 729 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 LNPEPQ9UIQ6 1025 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 CCNT2O60583 730 aaKnown RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 NPY5RQ15761 445 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 LLGL2Q6P1M3 1020 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 DHDDSQ86SQ9 333 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 DGCR14Q96DF8 476 aaKnown RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 TEKT5Q96M29 485 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 LRMDAQ9H2I8 198 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 SAGE2PA6NJ88 616 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 MT-CO1P00395 513 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 HLA-DQA2P01906 255 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 RLN1P04808 185 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 MPP3Q13368 585 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 NT5DC4Q86YG4 428 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 OR52L1Q8NGH7 329 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms