RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 FRMD7Q6ZUT3 714 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 SLC39A11Q8N1S5 342 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 ZFP28Q8NHY6 868 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 SHKBP1Q8TBC3 707 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 PEBP4Q96S96 227 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 NAT9Q9BTE0 207 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 XYLT2Q9H1B5 865 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 CYTH4Q9UIA0 394 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 AP4B1Q9Y6B7 739 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 MYO7AQ13402 2215 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 CAPN8A6NHC0 703 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 ZNF701M0R085 212 aaPredicted RBP10.5□□□□□ -0.73
UPF3B-201ENST00000276201 APOL1O14791 398 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 KCNN4O15554 427 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 UGT1A9O60656 530 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 PDE5AO76074 875 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 CSPG5O95196 566 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 ZBED1O96006 694 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 ERBB2P04626 1255 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 MX2P20592 715 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 GPD1P21695 349 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 GRM5P41594 1212 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 SLC11A1P49279 550 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 PRKAA2P54646 552 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 CDH6P55285 790 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 MYL6P60660 151 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 TUBA4AP68366 448 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 TXNL4AP83876 142 aaKnown RBP10.5□□□□□ -0.73
UPF3B-201ENST00000276201 DSC1Q08554 894 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 ZBTB41Q5SVQ8 909 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 TMEM173Q86WV6 379 aaPredicted RBP10.5□□□□□ -0.73
UPF3B-201ENST00000276201 HPS6Q86YV9 775 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 SLC7A14Q8TBB6 771 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 DEPDC1BQ8WUY9 529 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 BCL7CQ8WUZ0 217 aaPredicted RBP10.5□□□□□ -0.73
UPF3B-201ENST00000276201 CDKL2Q92772 493 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 LRGUKQ96M69 825 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 GCNAQ96QF7 691 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 ZNF670Q9BS34 389 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 LMAN2LQ9H0V9 348 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 CDH19Q9H159 772 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 UGT1A7Q9HAW7 530 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 UGT1A10Q9HAW8 530 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 UGT1A8Q9HAW9 530 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 SPG21Q9NZD8 308 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 COPG2Q9UBF2 871 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 SH3BP1Q9Y3L3 701 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 CEPT1Q9Y6K0 416 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 AK5Q9Y6K8 562 aa10.5□□□□□ -0.73
UPF3B-201ENST00000276201 EYSQ5T1H1 3165 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 C2CD4BA6NLJ0 364 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 NT5C1B-RDH14C9J2C7 533 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 TXNDC9O14530 226 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 PTGESO14684 152 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 TRMUO75648 421 aaKnown RBP10.49□□□□□ -0.73
UPF3B-201ENST00000276201 ZNF189O75820 626 aaPredicted RBP10.49□□□□□ -0.73
UPF3B-201ENST00000276201 C8BP07358 591 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 GALTP07902 379 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 ZFXP17010 805 aaPredicted RBP10.49□□□□□ -0.73
UPF3B-201ENST00000276201 ZNF23P17027 643 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 PPM1AP35813 382 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 PSMD8P48556 350 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 ACADVLP49748 655 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 CDK9P50750 372 aaKnown RBP10.49□□□□□ -0.73
UPF3B-201ENST00000276201 ADARP55265 1226 aaKnown RBP10.49□□□□□ -0.73
UPF3B-201ENST00000276201 PDE1CQ14123 709 aaPredicted RBP10.49□□□□□ -0.73
UPF3B-201ENST00000276201 ZNF423Q2M1K9 1284 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 PIGGQ5H8A4 983 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 MROH9Q5TGP6 573 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 NPNTQ6UXI9 565 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 PACS1Q6VY07 963 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 ZNF554Q86TJ5 538 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 PQLC3Q8N755 202 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 POU5F2Q8N7G0 328 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 RP9Q8TA86 221 aaKnown RBP10.49□□□□□ -0.73
UPF3B-201ENST00000276201 POF1BQ8WVV4 589 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 DUS3LQ96G46 650 aaKnown RBP10.49□□□□□ -0.73
UPF3B-201ENST00000276201 TCHPQ9BT92 498 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 CALN1Q9BXU9 219 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 ZNF385DQ9H6B1 395 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 RPS6KL1Q9Y6S9 549 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 TDRD15B5MCY1 1934 aaKnown RBP10.49□□□□□ -0.73
UPF3B-201ENST00000276201 REV3LO60673 3130 aa10.49□□□□□ -0.73
UPF3B-201ENST00000276201 RGSL1A5PLK6 1076 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 TRIM64CA6NLI5 447 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 E9PBE3 544 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 MDM4O15151 490 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 OGTO15294 1046 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 PFDN1O60925 122 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 LYPLA1O75608 230 aaPredicted RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 PGM3O95394 542 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 ALDOAP04075 364 aaKnown RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 RALBP11234 206 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 IL4RP24394 825 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 NR2C2P49116 596 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 ALDH7A1P49419 539 aaKnown RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 OSTNP61366 133 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 RPL10AP62906 217 aaKnown RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 TRMT10BQ6PF06 316 aaKnown RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 ZCCHC23Q6ZST2 131 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms