RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 TGM3Q08188 693 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 RIPK1Q13546 671 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 POTEHQ6S545 545 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 ULK2Q8IYT8 1036 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 HELQQ8TDG4 1101 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 FNIP1Q8TF40 1166 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 KCTD4Q8WVF5 259 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 MRPL9Q9BYD2 267 aaKnown RBP10.88□□□□□ -0.67
CD44-201ENST00000263398 SNX15Q9NRS6 342 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 SMIM31A0A1B0GVY4 71 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 B4GALT4O60513 344 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 SERPINI2O75830 405 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 RPL5P46777 297 aaKnown RBP10.88□□□□□ -0.67
CD44-201ENST00000263398 GPR15P49685 360 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 CEP78Q5JTW2 689 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 OR8H2Q8N162 312 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 SLC44A1Q8WWI5 657 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 SOCS4Q8WXH5 440 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 TINF2Q9BSI4 451 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 RNF19AQ9NV58 838 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 ARL15Q9NXU5 204 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 XPR1Q9UBH6 696 aa10.88□□□□□ -0.67
CD44-201ENST00000263398 LEF1Q9UJU2 399 aaPredicted RBP10.88□□□□□ -0.67
CD44-201ENST00000263398 PNMA8CA0A1B0GUJ8 204 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 TBKBP1A7MCY6 615 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 SHOX2O60902 331 aaPredicted RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 BPGMP07738 259 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 ATP5C1P36542 298 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 TALDO1P37837 337 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 CD86P42081 329 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 PDK3Q15120 406 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 ARMC4Q5T2S8 1044 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 ZNF621Q6ZSS3 439 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 MARK2Q7KZI7 788 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 PHACTR4Q8IZ21 702 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 ZNF276Q8N554 614 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 ZNF614Q8N883 585 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 MED8Q96G25 268 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 CNGB3Q9NQW8 809 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 MAN1C1Q9NR34 630 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 PTCH2Q9Y6C5 1203 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 NALCNQ8IZF0 1738 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 ADM5C9JUS6 153 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 TRAFD1O14545 582 aaPredicted RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 B4GALT5O43286 388 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 PEX11AO75192 247 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 AVILO75366 819 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 MLYCDO95822 493 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 PABPC1P11940 636 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 PAX3P23760 479 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 GRM5P41594 1212 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 RFX3P48380 749 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 ST13P50502 369 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 NR1H2P55055 460 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 C21orf59P57076 290 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 PTP4A2Q12974 167 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 CRY1Q16526 586 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 CRY2Q49AN0 593 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 TYW3Q6IPR3 259 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 STRADAQ7RTN6 431 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 TRMT11Q7Z4G4 463 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 CLNKQ7Z7G1 428 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.87□□□□□ -0.67
CD44-201ENST00000263398 TNS4Q8IZW8 715 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 C12orf29Q8N999 325 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 P2RY11Q96G91 374 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 YME1L1Q96TA2 773 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 TBCDQ9BTW9 1192 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 HSD3B7Q9H2F3 369 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 CYLDQ9NQC7 956 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 SLC17A7Q9P2U7 560 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 KLQ9UEF7 1012 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 DAPK2Q9UIK4 370 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 KLHL20Q9Y2M5 609 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 WFS1O76024 890 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 ABCB1P08183 1280 aaPredicted RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 EPHA3P29320 983 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 CAPZA2P47755 286 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 POLR2LP62875 67 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 MRPS5P82675 430 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 SFSWAPQ12872 951 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 UBAP2LQ14157 1087 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 DGUOKQ16854 277 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 LLGL2Q6P1M3 1020 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 ARHGAP22Q7Z5H3 698 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 C8orf59Q8N0T1 100 aaPredicted RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 AADATQ8N5Z0 425 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 MAGEE2Q8TD90 523 aaPredicted RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 FAM84AQ96KN4 292 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 RIBC2Q9H4K1 309 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 TMCO1Q9UM00 188 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 NID2Q14112 1375 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 MANSC4A6NHS7 340 aaPredicted RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 YDJCA8MPS7 323 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 PLSCR1O15162 318 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 CATP04040 527 aaKnown RBP10.87□□□□□ -0.67
CD44-201ENST00000263398 ANXA5P08758 320 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 TYMPP19971 482 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 FECHP22830 423 aa10.87□□□□□ -0.67
CD44-201ENST00000263398 PSMA3P25788 255 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms