RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 OR6P1Q8NGX9 317 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 ATP6V1E2Q96A05 226 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 CDCA5Q96FF9 252 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 MROH8Q9H579 483 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 CAAP1Q9H8G2 361 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 TRPC7Q9HCX4 862 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 OXSMQ9NWU1 459 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 STK39Q9UEW8 545 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 BCAP29Q9UHQ4 241 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 MGAMO43451 1857 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 POLR2AP24928 1970 aaKnown RBP12.83□□□□□ -0.36
LIG1-201ENST00000263274 CCL22O00626 93 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 HNRNPRO43390 633 aaKnown RBP12.83□□□□□ -0.36
LIG1-201ENST00000263274 TOMM70O94826 608 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 SEC24DO94855 1032 aaPredicted RBP12.83□□□□□ -0.36
LIG1-201ENST00000263274 AHSGP02765 367 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 STMN1P16949 149 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 CDH17Q12864 832 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 CEACAM7Q14002 265 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 PITRM1Q5JRX3 1037 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 ZNF470Q6ECI4 717 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 KRT80Q6KB66 452 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 DIS3LQ8TF46 1054 aaKnown RBP12.83□□□□□ -0.36
LIG1-201ENST00000263274 SNRNP27Q8WVK2 155 aaKnown RBP12.83□□□□□ -0.36
LIG1-201ENST00000263274 PHF12Q96QT6 1004 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 PKP2Q99959 881 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 MLPHQ9BV36 600 aaPredicted RBP12.83□□□□□ -0.36
LIG1-201ENST00000263274 MRPL1Q9BYD6 325 aaKnown RBP12.83□□□□□ -0.36
LIG1-201ENST00000263274 POMKQ9H5K3 350 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 IGSF9Q9P2J2 1179 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 A0A0G2JLL6 359 aaPredicted RBP12.82□□□□□ -0.36
LIG1-201ENST00000263274 FAM95CA0A1B0GW59 222 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 MYBPHLA2RUH7 354 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 C9JVG2 144 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 STAMBPO95630 424 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 CRTAMO95727 393 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 PPARGP37231 505 aaPredicted RBP12.82□□□□□ -0.36
LIG1-201ENST00000263274 MYBPC3Q14896 1274 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 NOMO2Q5JPE7 1267 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 STXBP5Q5T5C0 1151 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 NAPEPLDQ6IQ20 393 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 ARHGAP36Q6ZRI8 547 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 PRRT2Q7Z6L0 340 aaPredicted RBP12.82□□□□□ -0.36
LIG1-201ENST00000263274 KBTBD6Q86V97 674 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 CRYBG2Q8N1P7 616 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 MIPOL1Q8TD10 442 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 SLC2A6Q9UGQ3 507 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 USP3Q9Y6I4 520 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 DNAJA2O60884 412 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 DAB1O75553 588 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 LRIG2O94898 1065 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 SPATA31D3P0C874 917 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 CD68P34810 354 aaPredicted RBP12.82□□□□□ -0.36
LIG1-201ENST00000263274 NAB1Q13506 487 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 TAPT1Q6NXT6 567 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 CLEC20AQ6ZU45 233 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 SPATA31D4Q6ZUB0 917 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 LDB1Q86U70 411 aaPredicted RBP12.82□□□□□ -0.36
LIG1-201ENST00000263274 PDCD6IPQ8WUM4 868 aaKnown RBP12.82□□□□□ -0.36
LIG1-201ENST00000263274 NPY6RQ99463 290 aa12.82□□□□□ -0.36
LIG1-201ENST00000263274 MATN2O00339 956 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 DLX3O60479 287 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 MAGEA10P43363 369 aaPredicted RBP12.81□□□□□ -0.36
LIG1-201ENST00000263274 CHRNA4P43681 627 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 USP46P62068 366 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 SLC12A1Q13621 1099 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 CYS1Q717R9 158 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 GPRIN1Q7Z2K8 1008 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 GPRC5AQ8NFJ5 357 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 PPTC7Q8NI37 304 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 EIF2B3Q9NR50 452 aaKnown RBP12.81□□□□□ -0.36
LIG1-201ENST00000263274 ADAM28Q9UKQ2 775 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 AURKCQ9UQB9 309 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 TLL2Q9Y6L7 1015 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 CASTOR2A6NHX0 329 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 MEIS3P2A8K0S8 358 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 H3BNX3 289 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 CTSHP09668 335 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 SMPD1P17405 629 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 MARCH8Q5T0T0 291 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 RP9Q8TA86 221 aaKnown RBP12.81□□□□□ -0.36
LIG1-201ENST00000263274 TMEM40Q8WWA1 233 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 SLC10A4Q96EP9 437 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 IL22Q9GZX6 179 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 DNAJC25-GNG10A0A024R161 153 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 C9IYK1 514 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 MYL3P08590 195 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 ARL1P40616 181 aaPredicted RBP12.81□□□□□ -0.36
LIG1-201ENST00000263274 GJA9P57773 515 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 TMED1Q13445 227 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 KIF19Q2TAC6 998 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 NADK2Q4G0N4 442 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 TMEM135Q86UB9 458 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 ZNF410Q86VK4 478 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 IFNEQ86WN2 208 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 ATPAF2Q8N5M1 289 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 LPPQ93052 612 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 TSPAN18Q96SJ8 248 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 SLC39A3Q9BRY0 314 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 TSPYL2Q9H2G4 693 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms