RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 PLK1P53350 603 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 NAGLUP54802 743 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 RHAGQ02094 409 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 PPATQ06203 517 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 NDUFAF6Q330K2 333 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 TIGD7Q6NT04 549 aaPredicted RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 KCTD8Q6ZWB6 473 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 BLOC1S5Q8TDH9 187 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 HDAC2Q92769 488 aaKnown RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 NACC2Q96BF6 587 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 TLCD1Q96CP7 247 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 NPAS2Q99743 824 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 PNPOQ9NVS9 261 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 EGFL7Q9UHF1 273 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 CRLS1Q9UJA2 301 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 IQSEC2Q5JU85 1478 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 SF3B1O75533 1304 aaKnown RBP eCLIP10.56□□□□□ -0.721e-6■■■■■ 40.8
VCL-201ENST00000211998 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 VPS26AO75436 327 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 RECQL5O94762 991 aaPredicted RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 FBXO21O94952 628 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 DHFRP00374 187 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 ATF6P18850 670 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 TKTP29401 623 aaKnown RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 CD151P48509 253 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 CLCN2P51788 898 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 ZNF177Q13360 481 aaPredicted RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 PDIA6Q15084 440 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 ARMC6Q6NXE6 501 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 TAS1R2Q8TE23 839 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 ANKRD49Q8WVL7 239 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 FAXDC2Q96IV6 333 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 CGRRF1Q99675 332 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 ACAT2Q9BWD1 397 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 TBCCD1Q9NVR7 557 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 SNX7Q9UNH6 387 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 MAGEB16A2A368 324 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 PSIP1O75475 530 aaKnown RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 RXRGP48443 463 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 CDK9P50750 372 aaKnown RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 ORC1Q13415 861 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 CDH18Q13634 790 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 SLC1A5Q15758 541 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 SMIM5Q71RC9 77 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 SH3RF1Q7Z6J0 888 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 TMC2Q8TDI7 906 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 PIGUQ9H490 435 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 WDCPQ9H6R7 721 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 KRCC1Q9NPI7 259 aaPredicted RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 C8orf4Q9NR00 106 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 BLOC1S4Q9NUP1 217 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 FAM53CQ9NYF3 392 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 DRG1Q9Y295 367 aaKnown RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 FOXO6A8MYZ6 492 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 NKRFO15226 690 aaKnown RBP eCLIP10.56□□□□□ -0.72
VCL-201ENST00000211998 SPTLC1O15269 473 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 KPNA6O60684 536 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 GSTM5P46439 218 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 CDC42P60953 191 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 ENPEPQ07075 957 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 EIF2B5Q13144 721 aaKnown RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 NAB1Q13506 487 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 ALFQ53S48 1182 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 MIIPQ5JXC2 388 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 OGFOD2Q6N063 350 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 SAMD7Q7Z3H4 446 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 ANKRD23Q86SG2 305 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 C12orf56Q8IXR9 622 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 SMYD1Q8NB12 490 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 TMEM169Q96HH4 297 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 MNTQ99583 582 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 AGXT2Q9BYV1 514 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 TTYH1Q9H313 450 aaPredicted RBP10.56□□□□□ -0.72
VCL-201ENST00000211998 TAS2R14Q9NYV8 317 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 GTF2A1LQ9UNN4 478 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 USP20Q9Y2K6 914 aa10.56□□□□□ -0.72
VCL-201ENST00000211998 C2orf81A6NN90 581 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 TMEM114B3SHH9 223 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 H3BSA7 217 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 STX11O75558 287 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 BMP10O95393 424 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 TPH1P17752 444 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 FGFR2P21802 821 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 CCNCP24863 283 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 NIPAL1Q6NVV3 410 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 STX12Q86Y82 276 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 AP3S1Q92572 193 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 CRISPLD1Q9H336 500 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 BCLAF3A2AJT9 711 aaKnown RBP10.55□□□□□ -0.72
VCL-201ENST00000211998 GNB5O14775 395 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 HDAC3O15379 428 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 TBX10O75333 385 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 ADSLP30566 484 aaPredicted RBP10.55□□□□□ -0.72
VCL-201ENST00000211998 RAP1GAPP47736 663 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 MARCKSL1P49006 195 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 MAPKAPK2P49137 400 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 BACE1P56817 501 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 OR2B6P58173 313 aa10.55□□□□□ -0.72
VCL-201ENST00000211998 C1QBPQ07021 282 aaKnown RBP10.55□□□□□ -0.72
VCL-201ENST00000211998 TRIM32Q13049 653 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms