RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 PRNPP04156 253 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 EPHX1P07099 455 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 SYPP08247 313 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 NRG3P56975 720 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 ILF3Q12906 894 aaKnown RBP eCLIP6.21□□□□□ -1.42
SCN1A-217ENST00000637988 CHSY3Q70JA7 882 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 EXOC3L1Q86VI1 746 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.21□□□□□ -1.42
SCN1A-217ENST00000637988 ZMYND8Q9ULU4 1186 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-217ENST00000637988 E9PCH4 1651 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 A0A087X1B8 175 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 H0Y3Z8 333 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 IGKV5-2P06315 115 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 DUSP3P51452 185 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-217ENST00000637988 PRKAA2P54646 552 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 SMIM11AP58511 58 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 PTPN11Q06124 597 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-217ENST00000637988 ITPK1Q13572 414 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 NFYCQ13952 458 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 CELF3Q5SZQ8 465 aaKnown RBP6.21□□□□□ -1.42
SCN1A-217ENST00000637988 METTL21CQ5VZV1 264 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 SNX32Q86XE0 403 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 C4orf19Q8IY42 314 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 FRMD6Q96NE9 622 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 DPEP2Q9H4A9 486 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 SEMA3GQ9NS98 782 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 CISHQ9NSE2 258 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 FAM153AQ9UHL3 310 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 LGALS2P05162 132 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 PTPN2P17706 415 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 EPORP19235 508 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 TCN1P20061 433 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-217ENST00000637988 NUMBP49757 651 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 PTSQ03393 145 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 DMPKQ09013 629 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 NR1D2Q14995 579 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 NECTIN1Q15223 517 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 ATCAYQ86WG3 371 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 MB21D2Q8IYB1 491 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-217ENST00000637988 ALLCQ8N6M5 410 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 FNDC5Q8NAU1 212 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 SPPL2AQ8TCT8 520 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 TIFAQ96CG3 184 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 SENP8Q96LD8 212 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 SLC38A2Q96QD8 506 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 ZYG11BQ9C0D3 744 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 ALG13Q9NP73 1137 aaKnown RBP6.21□□□□□ -1.42
SCN1A-217ENST00000637988 TMEM216Q9P0N5 145 aa6.21□□□□□ -1.42
SCN1A-217ENST00000637988 FAM234BA2RU67 622 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 GMNCA6NCL1 334 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 HACD1B0YJ81 288 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 KMOO15229 486 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 VIL1P09327 827 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 CHI3L2Q15782 390 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 KLHL26Q53HC5 615 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SLC9A4Q6AI14 798 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 FAM228AQ86W67 206 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SLC4A11Q8NBS3 891 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 AKT1S1Q96B36 256 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 PDCD10Q9BUL8 212 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 ASB8Q9H765 288 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 RNF121Q9H920 327 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 A1CFQ9NQ94 594 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 PRDM15P57071 1507 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 DCCP43146 1447 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 TTLL8A6PVC2 850 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 PP2D1A8MPX8 630 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 LARGE1O95461 756 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 MAPTP10636 758 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 BMP7P18075 431 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 CD151P48509 253 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 PLIN5Q00G26 463 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SPANXN3Q5MJ09 141 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 PDSS1Q5T2R2 415 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 IRGCQ6NXR0 463 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 RINLQ6ZS11 566 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 C17orf53Q8N3J3 647 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SGCDQ92629 289 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 AGPAT3Q9NRZ7 376 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 IMP3Q9NV31 184 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 MTRRQ9UBK8 725 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 ABCA6Q8N139 1617 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 TCP11X1B4DZS4 312 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 NR5A2O00482 541 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 MMP3P08254 477 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 CCKBRP32239 447 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 TMEM26Q6ZUK4 368 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 NIPA1Q7RTP0 329 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 PRCCQ92733 491 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 TKTL2Q9H0I9 626 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 LRMDAQ9H2I8 198 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 TSPAN16Q9UKR8 245 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 SCGB2A1O75556 95 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 CDH3P22223 829 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 CMPK1P30085 196 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 NDST1P52848 882 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 TRAF2Q12933 501 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 ORC1Q13415 861 aa6.2□□□□□ -1.42
SCN1A-217ENST00000637988 DCTN2Q13561 401 aaKnown RBP6.2□□□□□ -1.42
SCN1A-217ENST00000637988 NAB2Q15742 525 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms