RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 FBXL19Q6PCT2 694 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 MFSD7Q6UXD7 560 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 TMPRSS11AQ6ZMR5 421 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 SYVN1Q86TM6 617 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 STK32CQ86UX6 486 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 RNF149Q8NC42 400 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 MAFIPQ8WZ33 124 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 LPAR1Q92633 364 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 UPF1Q92900 1129 aaKnown RBP eCLIP6.09□□□□□ -1.43
SCN1A-212ENST00000636194 MCEEQ96PE7 176 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 SPTLC3Q9NUV7 552 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 PRMT7Q9NVM4 692 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-212ENST00000636194 HIF3AQ9Y2N7 669 aa6.09□□□□□ -1.43
SCN1A-212ENST00000636194 A0A0G2JPF8 293 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 LOC100506127A0A0U1RQW1 187 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 TEX51A0A1B0GUA7 166 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 SDR42E2A6NKP2 422 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 HNRNPCL3B7ZW38 293 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 C9IYK1 514 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 H3BRB1 525 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 MAGEC1O60732 1142 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 UBTFL6P0CB48 400 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-212ENST00000636194 THEGLP0DJG4 465 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 HNRNPCL4P0DMR1 293 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 CHRNB4P30926 498 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 GJA9P57773 515 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 GPSM2P81274 684 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 TOP3AQ13472 1001 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-212ENST00000636194 NCOA4Q13772 614 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 RRP1BQ14684 758 aaKnown RBP6.09□□□□□ -1.44
SCN1A-212ENST00000636194 TEAD4Q15561 434 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 EPC2Q52LR7 807 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 FOXR1Q6PIV2 292 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 LPCAT2Q7L5N7 544 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 S100A7AQ86SG5 101 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 MRPL9Q9BYD2 267 aaKnown RBP6.09□□□□□ -1.44
SCN1A-212ENST00000636194 CRTAC1Q9NQ79 661 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 AASSQ9UDR5 926 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 GNPTGQ9UJJ9 305 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 PCDHA7Q9UN72 937 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 EDARQ9UNE0 448 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 PCDHGB2Q9Y5G2 931 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 TNPO3Q9Y5L0 923 aaKnown RBP6.09□□□□□ -1.44
SCN1A-212ENST00000636194 LOXHD1Q8IVV2 1947 aa6.09□□□□□ -1.44
SCN1A-212ENST00000636194 PTCH1Q13635 1447 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 C1orf232A0A0U1RR37 186 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 CLN5O75503 358 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 APOL3O95236 402 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 PHKG2P15735 406 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 RBM34P42696 430 aaKnown RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 PPP2R2BQ00005 443 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 PRKG2Q13237 762 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 EIF2B1Q14232 305 aaKnown RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 CBWD3Q5JTY5 395 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 CBWD5Q5RIA9 395 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 TMEM164Q5U3C3 297 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 LYPLAL1Q5VWZ2 237 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 FAM117BQ6P1L5 589 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 CHST15Q7LFX5 561 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 RD3Q7Z3Z2 195 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 CMTR1Q8N1G2 835 aaKnown RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 Q8N402 240 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 BEND7Q8N7W2 519 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 C1orf216Q8TAB5 229 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF512BQ96KM6 892 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 ZNF717Q9BY31 904 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 DCLK3Q9C098 648 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 NUDT5Q9UKK9 219 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 FER1L6Q2WGJ9 1857 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 PHGDHO43175 533 aaKnown RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 PMPCBO75439 489 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 KCNH1O95259 989 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 IGSF6O95976 241 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 RGS19P49795 217 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 NFE2Q16621 373 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 VMACQ2NL98 169 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 LSM12Q3MHD2 195 aaKnown RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 ZBTB49Q6ZSB9 765 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 TTC7BQ86TV6 843 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 CD302Q8IX05 232 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 ZZZ3Q8IYH5 903 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 ARMC10Q8N2F6 343 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 OR7A2PQ8NGA2 310 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 COQ8AQ8NI60 647 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 CLIP3Q96DZ5 547 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 TMEM120AQ9BXJ8 343 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 MARCH7Q9H992 704 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 UBQLN1Q9UMX0 589 aaKnown RBP6.08□□□□□ -1.44
SCN1A-212ENST00000636194 SSR3Q9UNL2 185 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 CROCC2H7BZ55 1655 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 FAM234BA2RU67 622 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 USP17L15C9J2P7 530 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 USP17L13C9JLJ4 530 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 USP17L11C9JVI0 530 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 USP17L18D6R9N7 530 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 USP17L22D6RA61 530 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 USP17L17D6RBQ6 530 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 USP17L19D6RCP7 530 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 USP17L20D6RJB6 530 aa6.08□□□□□ -1.44
SCN1A-212ENST00000636194 TNFRSF10BO14763 440 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms