RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 GUCA1BQ9UMX6 200 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 HS3ST2Q9Y278 367 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 MFHAS1Q9Y4C4 1052 aa18.46■□□□□ 0.55
CLN3-239ENST00000628023 TARSL2A2RTX5 802 aaKnown RBP18.45■□□□□ 0.54
CLN3-239ENST00000628023 ZSCAN5CA6NGD5 496 aaPredicted RBP18.45■□□□□ 0.54
CLN3-239ENST00000628023 DCLK1O15075 740 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 KDELR3O43731 214 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 ATP9BO43861 1147 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 BNIP3LO60238 219 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 SIN3BO75182 1162 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 PALMO75781 387 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 MT-CO1P00395 513 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 NDUFV2P19404 249 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 KDELR1P24390 212 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 SERPINH1P50454 418 aaKnown RBP18.45■□□□□ 0.54
CLN3-239ENST00000628023 VASPP50552 380 aaPredicted RBP18.45■□□□□ 0.54
CLN3-239ENST00000628023 CLCN6P51797 869 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 SLC20A2Q08357 652 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 CAMK2GQ13555 558 aaPredicted RBP18.45■□□□□ 0.54
CLN3-239ENST00000628023 DLG2Q15700 870 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 STPG1Q5TH74 334 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 LEKR1Q6ZMV7 388 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 RNF25Q96BH1 459 aaPredicted RBP18.45■□□□□ 0.54
CLN3-239ENST00000628023 CCDC114Q96M63 670 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 MAK16Q9BXY0 300 aaKnown RBP18.45■□□□□ 0.54
CLN3-239ENST00000628023 SLC39A8Q9C0K1 460 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 SLC6A17Q9H1V8 727 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 LRRC19Q9H756 370 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 PRDM16Q9HAZ2 1276 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 SP110Q9HB58 689 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 PRSS16Q9NQE7 514 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 ETNK2Q9NVF9 386 aa18.45■□□□□ 0.54
CLN3-239ENST00000628023 CNOT1A5YKK6 2376 aaKnown RBP18.45■□□□□ 0.54
CLN3-239ENST00000628023 EML5Q05BV3 1969 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 CKAP5Q14008 2032 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 K7ERQ8 282 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 RNASEH1O60930 286 aaKnown RBP18.44■□□□□ 0.54
CLN3-239ENST00000628023 ZMPSTE24O75844 475 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 ACADMP11310 421 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 VAV1P15498 845 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 IL4RP24394 825 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 RECQLP46063 649 aaPredicted RBP18.44■□□□□ 0.54
CLN3-239ENST00000628023 PAPOLAP51003 745 aaKnown RBP18.44■□□□□ 0.54
CLN3-239ENST00000628023 SERINC3Q13530 473 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 C22orf39Q6P5X5 142 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 Q6ZVU0 165 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 PEX26Q7Z412 305 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 TMPRSS6Q8IU80 811 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 CCDC50Q8IVM0 306 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 NETO2Q8NC67 525 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 PRCCQ92733 491 aaPredicted RBP18.44■□□□□ 0.54
CLN3-239ENST00000628023 SPACA7Q96KW9 195 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 MRGPRX1Q96LB2 322 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 MKRN2Q9H000 416 aaKnown RBP18.44■□□□□ 0.54
CLN3-239ENST00000628023 CD248Q9HCU0 757 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 LZTFL1Q9NQ48 299 aa18.44■□□□□ 0.54
CLN3-239ENST00000628023 ACACBO00763 2458 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 BCLAF3A2AJT9 711 aaKnown RBP18.43■□□□□ 0.54
CLN3-239ENST00000628023 DNA2P51530 1060 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 COPAP53621 1224 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 CCDC173Q0VFZ6 552 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 C9orf64Q5T6V5 341 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 ZNF776Q68DI1 518 aaPredicted RBP18.43■□□□□ 0.54
CLN3-239ENST00000628023 METTL3Q86U44 580 aaKnown RBP18.43■□□□□ 0.54
CLN3-239ENST00000628023 RFX6Q8HWS3 928 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 ARHGAP12Q8IWW6 846 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 KATNAL2Q8IYT4 538 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 STK40Q8N2I9 435 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 ATPAF2Q8N5M1 289 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 RNF10Q8N5U6 811 aaKnown RBP18.43■□□□□ 0.54
CLN3-239ENST00000628023 PCDH19Q8TAB3 1148 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 OR8D1Q8WZ84 308 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 FAF2Q96CS3 445 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 SIPA1Q96FS4 1042 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 ZNF830Q96NB3 372 aaPredicted RBP18.43■□□□□ 0.54
CLN3-239ENST00000628023 CEP44Q9C0F1 390 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 KLC2Q9H0B6 622 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 SMOC1Q9H4F8 434 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 UBA2Q9UBT2 640 aaPredicted RBP18.43■□□□□ 0.54
CLN3-239ENST00000628023 AMFRQ9UKV5 643 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 INVSQ9Y283 1065 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 PPP2R2CQ9Y2T4 447 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 FCF1Q9Y324 198 aaKnown RBP18.43■□□□□ 0.54
CLN3-239ENST00000628023 FARP1Q9Y4F1 1045 aaPredicted RBP18.43■□□□□ 0.54
CLN3-239ENST00000628023 ACTL7AQ9Y615 435 aa18.43■□□□□ 0.54
CLN3-239ENST00000628023 CXorf51AA0A1B0GTR3 108 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 MAP3K13O43283 966 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 SMAD6O43541 496 aaKnown RBP18.42■□□□□ 0.54
CLN3-239ENST00000628023 MFSD11O43934 449 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 DNTTP04053 509 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 CTNNA1P35221 906 aaKnown RBP18.42■□□□□ 0.54
CLN3-239ENST00000628023 MARCKSL1P49006 195 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 BYSLQ13895 437 aaKnown RBP18.42■□□□□ 0.54
CLN3-239ENST00000628023 ELAVL3Q14576 367 aaKnown RBP18.42■□□□□ 0.54
CLN3-239ENST00000628023 AFMIDQ63HM1 303 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 PMS2CLQ68D20 193 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 NCBP2-AS2Q69YL0 99 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 DSG4Q86SJ6 1040 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 VSIG1Q86XK7 387 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 RYBPQ8N488 228 aaPredicted RBP18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms