RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 NEBLO76041 1014 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 ARHGEF15O94989 841 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 CSPG5O95196 566 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 PEX11BO96011 259 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 MYL4P12829 197 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 PTPN2P17706 415 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 NFKB1P19838 968 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 NR1D1P20393 614 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 ATP5DP30049 168 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 HOXA9P31269 272 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 IRS1P35568 1242 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 GRIA1P42261 906 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 MMP13P45452 471 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 IFNAR2P48551 515 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 ERVK-21P61565 698 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 SLC7A9P82251 487 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 CYP4F8P98187 520 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 GABPB1Q06547 395 aaPredicted RBP9.08□□□□□ -0.96
CCDC47-207ENST00000612558 IL10RBQ08334 325 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 SERINC3Q13530 473 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 SHHQ15465 462 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 SKIDA1Q1XH10 827 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 KLHL38Q2WGJ6 581 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 TTC39BQ5VTQ0 682 aaPredicted RBP9.08□□□□□ -0.96
CCDC47-207ENST00000612558 KCTD11Q693B1 232 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 LYPD8Q6UX82 237 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 CAPN12Q6ZSI9 719 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 CHST9Q7L1S5 443 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 SPRED2Q7Z698 418 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 TDRPQ86YL5 185 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 CCNJLQ8IV13 435 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 KLHDC8BQ8IXV7 354 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 CFAP52Q8N1V2 620 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 AGGF1Q8N302 714 aaeCLIP9.08□□□□□ -0.96
CCDC47-207ENST00000612558 ARFGAP2Q8N6H7 521 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 USP33Q8TEY7 942 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 SLC22A17Q8WUG5 538 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 NSMCE1Q8WV22 266 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 FCRL5Q96RD9 977 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 EBNA1BP2Q99848 306 aaKnown RBP9.08□□□□□ -0.96
CCDC47-207ENST00000612558 GORASP1Q9BQQ3 440 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 CORO1BQ9BR76 489 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 MLPHQ9BV36 600 aaPredicted RBP9.08□□□□□ -0.96
CCDC47-207ENST00000612558 MAGEH1Q9H213 219 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 ATXN3LQ9H3M9 355 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 SP110Q9HB58 689 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 MAN1C1Q9NR34 630 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 RBM22Q9NW64 420 aaKnown RBP eCLIP9.08□□□□□ -0.967e-6■■■■□ 24.6
CCDC47-207ENST00000612558 NYNRINQ9P2P1 1898 aaKnown RBP9.08□□□□□ -0.96
CCDC47-207ENST00000612558 ZC3H7BQ9UGR2 993 aaKnown RBP9.08□□□□□ -0.96
CCDC47-207ENST00000612558 DPP7Q9UHL4 492 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 LGALS13Q9UHV8 139 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 CPQQ9Y646 472 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 DOCK6Q96HP0 2047 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 CHD5Q8TDI0 1954 aa9.08□□□□□ -0.96
CCDC47-207ENST00000612558 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 TRAV19A0A0A6YYK7 116 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 A0A1B0GVM2 712 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 A0A1W2PRU2 124 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 TCAF2A6NFQ2 919 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 H3BNC9 293 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 J3KR12 359 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 AP3B1O00203 1094 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 TRDMT1O14717 391 aaKnown RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 GREM1O60565 184 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 CLASP2O75122 1294 aaKnown RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 ZIC2O95409 532 aaPredicted RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 CPP00450 1065 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 CKMP06732 381 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 HNRNPA1P09651 372 aaKnown RBP eCLIP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 MAGEA10P43363 369 aaPredicted RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 EPHA5P54756 1037 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 GEMIN4P57678 1058 aaKnown RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 MAGOHP61326 146 aaKnown RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 RPS24P62847 133 aaKnown RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 TNK2Q07912 1038 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 ZNF177Q13360 481 aaPredicted RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 GPM6BQ13491 265 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 RASA2Q15283 850 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 MARC1Q5VT66 337 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 FAM109BQ6ICB4 259 aaPredicted RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 NAPEPLDQ6IQ20 393 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 KDM7AQ6ZMT4 941 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 OTOP3Q7RTS5 596 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 SETD3Q86TU7 594 aaPredicted RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 ZNF354CQ86Y25 554 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 MAB21L3Q8N8X9 362 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 ADAMTS19Q8TE59 1207 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 FBF1Q8TES7 1133 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 ARHGEF2Q92974 986 aaKnown RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 WBP2Q969T9 261 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 PRICKLE1Q96MT3 831 aaPredicted RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 CYTH2Q99418 400 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 NAT9Q9BTE0 207 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 ACSS3Q9H6R3 686 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 LRRC40Q9H9A6 602 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 GLOD4Q9HC38 313 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 SLC24A2Q9UI40 661 aa9.07□□□□□ -0.96
CCDC47-207ENST00000612558 LSM7Q9UK45 103 aaKnown RBP9.07□□□□□ -0.96
CCDC47-207ENST00000612558 ZNF510Q9Y2H8 683 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms