RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ZNF776Q68DI1 518 aaPredicted RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 SLC9A4Q6AI14 798 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 MMAAQ8IVH4 418 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 SYCE1Q8N0S2 351 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 PCDH20Q8N6Y1 951 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 FRMD1Q8N878 549 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 CASKIN2Q8WXE0 1202 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 ZNF830Q96NB3 372 aaPredicted RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 EPC1Q9H2F5 836 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 LZTFL1Q9NQ48 299 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 ITM2CQ9NQX7 267 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 USP36Q9P275 1121 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 IPO11Q9UI26 975 aaKnown RBP16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 PPP2R2CQ9Y2T4 447 aa16.86■□□□□ 0.29
CCDC28A-202ENST00000611852 CCDC66A2RUB6 948 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 TMCC1O94876 653 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 ZRANB2O95218 330 aaKnown RBP eCLIP16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 TPMTP51580 245 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 IL10RBQ08334 325 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 BYSLQ13895 437 aaKnown RBP16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 SPOCD1Q6ZMY3 1216 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 DPY19L3Q6ZPD9 716 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 PEX26Q7Z412 305 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 RCOR2Q8IZ40 523 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 FAM160A2Q8N612 972 aaPredicted RBP16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 PLD5Q8N7P1 536 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 EXD1Q8NHP7 514 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 OR8D1Q8WZ84 308 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 CCDC114Q96M63 670 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 PHOX2BQ99453 314 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 MAK16Q9BXY0 300 aaKnown RBP16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 SP110Q9HB58 689 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 UBA2Q9UBT2 640 aaPredicted RBP16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 AMFRQ9UKV5 643 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 CYP8B1Q9UNU6 501 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 PLXND1Q9Y4D7 1925 aa16.85■□□□□ 0.29
CCDC28A-202ENST00000611852 PROB1E7EW31 1015 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 ALOX15BO15296 676 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 MAFKO60675 156 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 FTCDO95954 541 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 DNTTP04053 509 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 ACADMP11310 421 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 RECQLP46063 649 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 PEX5P50542 639 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 DNA2P51530 1060 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 GBE1Q04446 702 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 SIM2Q14190 667 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 CST6Q15828 149 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 CARD16Q5EG05 197 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 DSG4Q86SJ6 1040 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 PLPP6Q8IY26 295 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 ATPAF2Q8N5M1 289 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 SPACA7Q96KW9 195 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 TM6SF2Q9BZW4 377 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 SEMA4AQ9H3S1 761 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 MBD1Q9UIS9 605 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 SARDHQ9UL12 918 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 PPM1HQ9ULR3 514 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 FARP1Q9Y4F1 1045 aaPredicted RBP16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 DMDP11532 3685 aa16.84■□□□□ 0.29
CCDC28A-202ENST00000611852 IGHV1OR15-9A0A0B4J2B8 117 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 APOL1O14791 398 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 IL1BP01584 269 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 IGLV3-19P01714 112 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 CTSLP07711 333 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 BCKDHBP21953 392 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 CHRNA3P32297 505 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 PSMD8P48556 350 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 GALNT2Q10471 571 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 SLC10A2Q12908 348 aaPredicted RBP16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 CYTH1Q15438 398 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 CEP68Q76N32 757 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 RFX6Q8HWS3 928 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 LRRC49Q8IUZ0 686 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 SUMF1Q8NBK3 374 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 CHST14Q8NCH0 376 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 OR2AP1Q8NGE2 309 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 ALG3Q92685 438 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 TRIM44Q96DX7 344 aaPredicted RBP16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 RBM41Q96IZ5 413 aaKnown RBP16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 PABPC3Q9H361 631 aaKnown RBP16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 DTLQ9NZJ0 730 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 SCML1Q9UN30 329 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 PACSIN2Q9UNF0 486 aaPredicted RBP16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 USP34Q70CQ2 3546 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 ABCA7Q8IZY2 2146 aa16.83■□□□□ 0.28
CCDC28A-202ENST00000611852 MIF4GDA9UHW6 222 aaKnown RBP16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 MID1O15344 667 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 MAP3K6O95382 1288 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 PEX11BO96011 259 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 ADH1BP00325 375 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 GSRP00390 522 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 KRT10P13645 584 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 SLC8A1P32418 973 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 GARSP41250 739 aaKnown RBP16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 CCNHP51946 323 aaPredicted RBP16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 RWDD2BP57060 319 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 RHOAP61586 193 aa16.82■□□□□ 0.28
CCDC28A-202ENST00000611852 SNRPD1P62314 119 aaKnown RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms