RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 RBM44Q6ZP01 1051 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 MMS22LQ6ZRQ5 1243 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 ERN2Q76MJ5 926 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 TMC6Q7Z403 805 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 ABI3BPQ7Z7G0 1075 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 TMEM110Q86TL2 294 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 SETD3Q86TU7 594 aaPredicted RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 TAC4Q86UU9 113 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 PARGQ86W56 976 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 ZDHHC17Q8IUH5 632 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 APCDD1Q8J025 514 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 SDR16C5Q8N3Y7 309 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 SLC25A45Q8N413 288 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 SH2D3CQ8N5H7 860 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 ATP11CQ8NB49 1132 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 DENND6BQ8NEG7 585 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 OR6C4Q8NGE1 309 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 WDR36Q8NI36 951 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 SCG3Q8WXD2 468 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 ASB12Q8WXK4 309 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 RAB7BQ96AH8 199 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 DHTKD1Q96HY7 919 aaPredicted RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 FEM1CQ96JP0 617 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 TBATAQ96M53 351 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 IL12RB2Q99665 862 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 FEM1AQ9BSK4 669 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 C1QTNF7Q9BXJ2 289 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 SLC4A5Q9BY07 1137 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 CEP44Q9C0F1 390 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 MUC3BQ9H195 1237 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 MTG2Q9H4K7 406 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 RETREG1Q9H6L5 497 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 DDIT4Q9NX09 232 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 NAALADL1Q9UQQ1 740 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 TBC1D30Q9Y2I9 924 aa6.45□□□□□ -1.38
CUX1-220ENST00000607092 SPTBN1Q01082 2364 aaKnown RBP6.45□□□□□ -1.38
CUX1-220ENST00000607092 NBASA2RRP1 2371 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 CCDC187A0A096LP49 1063 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 SPTY2D1-AS1A0A0U1RR47 76 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 EME2A4GXA9 379 aaPredicted RBP6.44□□□□□ -1.38
CUX1-220ENST00000607092 RCCD1A6NED2 376 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 K7ENP7 123 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 WNT9AO14904 365 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 SLC31A1O15431 190 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 FFAR2O15552 330 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 TSPAN6O43657 245 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 AP1G1O43747 822 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 SDC3O75056 442 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 WISP1O95388 367 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 GJB6O95452 261 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 IGLV3-25P01717 112 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 CSF2P04141 144 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 MPOP05164 745 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 FYNP06241 537 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 RHOCP08134 193 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 ITGA2BP08514 1039 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 KRT5P13647 590 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 NME1P15531 152 aaKnown RBP6.44□□□□□ -1.38
CUX1-220ENST00000607092 BRD2P25440 801 aaKnown RBP6.44□□□□□ -1.38
CUX1-220ENST00000607092 STK19P49842 368 aaPredicted RBP6.44□□□□□ -1.38
CUX1-220ENST00000607092 NEK3P51956 506 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 THOP1P52888 689 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 PIP5KL1Q5T9C9 394 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 ARHGAP40Q5TG30 622 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 CXorf57Q6NSI4 855 aaKnown RBP6.44□□□□□ -1.38
CUX1-220ENST00000607092 ESRP1Q6NXG1 681 aaKnown RBP6.44□□□□□ -1.38
CUX1-220ENST00000607092 FBXL22Q6P050 247 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 INO80CQ6PI98 192 aaPredicted RBP6.44□□□□□ -1.38
CUX1-220ENST00000607092 ZNF783Q6ZMS7 281 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 Q6ZVU0 165 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 PTAR1Q7Z6K3 402 aaPredicted RBP6.44□□□□□ -1.38
CUX1-220ENST00000607092 DCAF4L2Q8NA75 395 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 ZSCAN1Q8NBB4 408 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 EHBP1Q8NDI1 1231 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 OR13H1Q8NG92 308 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 IFI44Q8TCB0 444 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 TFAP2BQ92481 460 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 SMARCE1Q969G3 411 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 TMEM159Q96B96 161 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 VCPIP1Q96JH7 1222 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 APOLD1Q96LR9 279 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 SLC46A1Q96NT5 459 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 LENG8Q96PV6 779 aaPredicted RBP6.44□□□□□ -1.38
CUX1-220ENST00000607092 SLC17A9Q9BYT1 436 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 STRADBQ9C0K7 418 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 SYNCQ9H7C4 482 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 ASCL3Q9NQ33 180 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 DNAJC28Q9NX36 388 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 SPASTQ9UBP0 616 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 STAP1Q9ULZ2 295 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 CNTN6Q9UQ52 1028 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 PCDHGA7Q9Y5G6 932 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 PLXNA2O75051 1894 aa6.44□□□□□ -1.38
CUX1-220ENST00000607092 E5RJQ4 531 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 K7ESM1 405 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 PIK3R2O00459 728 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 NEMP1O14524 444 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 ZW10O43264 779 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 AQP9O43315 295 aa6.43□□□□□ -1.38
CUX1-220ENST00000607092 THAP12O43422 761 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms