RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TEX44Q53QW1 395 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 LEKR1Q6ZMV7 388 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 CTAGE6Q86UF2 777 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 CTAGE4Q8IX94 777 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 CCDC105Q8IYK2 499 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 BBS5Q8N3I7 341 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 ALLCQ8N6M5 410 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 FAM71DQ8N9W8 422 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 ATP11CQ8NB49 1132 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 CCDC26Q8TAB7 109 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 GRK7Q8WTQ7 553 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 SLCO2A1Q92959 643 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 ISG20Q96AZ6 181 aaKnown RBP14.61□□□□□ -0.07
UPF1-211ENST00000600868 MYO19Q96H55 970 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 RPL10LQ96L21 214 aaKnown RBP14.61□□□□□ -0.07
UPF1-211ENST00000600868 UHRF1Q96T88 793 aaPredicted RBP14.61□□□□□ -0.07
UPF1-211ENST00000600868 CEP44Q9C0F1 390 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 SEPT10Q9P0V9 454 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 SEPT3Q9UH03 358 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 TRHDEQ9UKU6 1024 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 HCN2Q9UL51 889 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 ACTL7AQ9Y615 435 aa14.61□□□□□ -0.07
UPF1-211ENST00000600868 SGK1O00141 431 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 RNF103O00237 685 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 SMAD6O43541 496 aaKnown RBP14.6□□□□□ -0.07
UPF1-211ENST00000600868 GCATO75600 419 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 TMCC1O94876 653 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 HSPA9P38646 679 aaKnown RBP14.6□□□□□ -0.07
UPF1-211ENST00000600868 KIR2DL1P43626 348 aaPredicted RBP14.6□□□□□ -0.07
UPF1-211ENST00000600868 ST8SIA6P61647 398 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 C2orf54Q08AI8 447 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 ZBTB17Q13105 803 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 P3H1Q32P28 736 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 KLHL7Q8IXQ5 586 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 SIX5Q8N196 739 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 ZNF687Q8N1G0 1237 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 ZNF419Q96HQ0 510 aaPredicted RBP14.6□□□□□ -0.07
UPF1-211ENST00000600868 TEKT5Q96M29 485 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 CCDC114Q96M63 670 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 PSKH2Q96QS6 385 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 NELL2Q99435 816 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 KRT12Q99456 494 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 CARD6Q9BX69 1037 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 HAUS2Q9NVX0 235 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 RBM22Q9NW64 420 aaKnown RBP eCLIP14.6□□□□□ -0.07
UPF1-211ENST00000600868 SLCO3A1Q9UIG8 710 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 SLC8A2Q9UPR5 921 aa14.6□□□□□ -0.07
UPF1-211ENST00000600868 KANSL1LA0AUZ9 987 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 K7ERQ8 282 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 OPHN1O60890 802 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 ECEL1O95672 775 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 GAS8O95995 478 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 CD72P21854 359 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 GDF10P55107 478 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 MRPS21P82921 87 aaKnown RBP14.59□□□□□ -0.07
UPF1-211ENST00000600868 NSUN2Q08J23 767 aaKnown RBP eCLIP14.59□□□□□ -0.07
UPF1-211ENST00000600868 ENPP2Q13822 863 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 DHX34Q14147 1143 aaKnown RBP14.59□□□□□ -0.07
UPF1-211ENST00000600868 ZNF234Q14588 700 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 ZNF235Q14590 738 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 DLG2Q15700 870 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 DGKKQ5KSL6 1271 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 ANKRD20A2Q5SQ80 823 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 ANKRD20A1Q5TYW2 823 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 EMC10Q5UCC4 262 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 ANKRD20A3Q5VUR7 823 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 EGFLAMQ63HQ2 1017 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 GSTA5Q7RTV2 222 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 PLPP6Q8IY26 295 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 ZNF567Q8N184 647 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 SYNPOQ8N3V7 929 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 MMGT1Q8N4V1 131 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 PCDH20Q8N6Y1 951 aaKnown RBP14.59□□□□□ -0.07
UPF1-211ENST00000600868 CNTD1Q8N815 330 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 ZNF513Q8N8E2 541 aaPredicted RBP14.59□□□□□ -0.07
UPF1-211ENST00000600868 CCDC89Q8N998 374 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 USP33Q8TEY7 942 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 SPATA13Q96N96 652 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 MGME1Q9BQP7 344 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 CINPQ9BW66 212 aaPredicted RBP14.59□□□□□ -0.07
UPF1-211ENST00000600868 TMEM245Q9H330 911 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 NT5MQ9NPB1 228 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 LTB4R2Q9NPC1 389 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 RRAGDQ9NQL2 400 aaPredicted RBP14.59□□□□□ -0.07
UPF1-211ENST00000600868 LHX3Q9UBR4 397 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 ATP8A1Q9Y2Q0 1164 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 FCF1Q9Y324 198 aaKnown RBP14.59□□□□□ -0.07
UPF1-211ENST00000600868 NEU2Q9Y3R4 380 aa14.59□□□□□ -0.07
UPF1-211ENST00000600868 MUC22E2RYF6 1773 aaPredicted RBP14.59□□□□□ -0.07
UPF1-211ENST00000600868 ZNF821O75541 412 aaPredicted RBP14.58□□□□□ -0.08
UPF1-211ENST00000600868 NEBLO76041 1014 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 IFNB1P01574 187 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 HLA-DQB2P05538 268 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 CHRNB1P11230 501 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 TARSP26639 723 aaKnown RBP14.58□□□□□ -0.08
UPF1-211ENST00000600868 TIE1P35590 1138 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 ACTN2P35609 894 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 PTGIRP43119 386 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 DR1Q01658 176 aa14.58□□□□□ -0.08
UPF1-211ENST00000600868 SIGLEC14Q08ET2 396 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms