RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 GBP4Q96PP9 640 aa10.01□□□□□ -0.81
VRK3-216ENST00000599342 MYOCQ99972 504 aa10.01□□□□□ -0.81
VRK3-216ENST00000599342 CEP44Q9C0F1 390 aa10.01□□□□□ -0.81
VRK3-216ENST00000599342 LMBRD1Q9NUN5 540 aa10.01□□□□□ -0.81
VRK3-216ENST00000599342 SEPT11Q9NVA2 429 aaKnown RBP10.01□□□□□ -0.81
VRK3-216ENST00000599342 NOCTQ9UK39 431 aaKnown RBP10.01□□□□□ -0.81
VRK3-216ENST00000599342 LHX6Q9UPM6 363 aa10.01□□□□□ -0.81
VRK3-216ENST00000599342 TP53BP1Q12888 1972 aaPredicted RBP10.01□□□□□ -0.81
VRK3-216ENST00000599342 USP24Q9UPU5 2620 aa10.01□□□□□ -0.81
VRK3-216ENST00000599342 WDFY3Q8IZQ1 3526 aa10□□□□□ -0.81
VRK3-216ENST00000599342 COL5A1P20908 1838 aaPredicted RBP10□□□□□ -0.81
VRK3-216ENST00000599342 CFAP47Q6ZTR5 3102 aa10□□□□□ -0.81
VRK3-216ENST00000599342 GOLGA6L22H0YM25 854 aa10□□□□□ -0.81
VRK3-216ENST00000599342 TAF4O00268 1085 aa10□□□□□ -0.81
VRK3-216ENST00000599342 SDC3O75056 442 aa10□□□□□ -0.81
VRK3-216ENST00000599342 LEFTY1O75610 366 aa10□□□□□ -0.81
VRK3-216ENST00000599342 CAPNS1P04632 268 aa10□□□□□ -0.81
VRK3-216ENST00000599342 C1SP09871 688 aa10□□□□□ -0.81
VRK3-216ENST00000599342 THEGLP0DJG4 465 aa10□□□□□ -0.81
VRK3-216ENST00000599342 HNRNPA2B1P22626 353 aaKnown RBP10□□□□□ -0.81
VRK3-216ENST00000599342 ADRA1BP35368 520 aa10□□□□□ -0.81
VRK3-216ENST00000599342 MAPKAPK2P49137 400 aa10□□□□□ -0.81
VRK3-216ENST00000599342 ACADVLP49748 655 aa10□□□□□ -0.81
VRK3-216ENST00000599342 NEK3P51956 506 aa10□□□□□ -0.81
VRK3-216ENST00000599342 JAM2P57087 298 aa10□□□□□ -0.81
VRK3-216ENST00000599342 GEMIN4P57678 1058 aaKnown RBP10□□□□□ -0.81
VRK3-216ENST00000599342 ARF5P84085 180 aa10□□□□□ -0.81
VRK3-216ENST00000599342 BNIP3Q12983 259 aa10□□□□□ -0.81
VRK3-216ENST00000599342 DNAJC3Q13217 504 aa10□□□□□ -0.81
VRK3-216ENST00000599342 C15orf59Q2T9L4 293 aaPredicted RBP10□□□□□ -0.81
VRK3-216ENST00000599342 SFMBT2Q5VUG0 894 aa10□□□□□ -0.81
VRK3-216ENST00000599342 DPY19L3Q6ZPD9 716 aa10□□□□□ -0.81
VRK3-216ENST00000599342 CLEC17AQ6ZS10 378 aa10□□□□□ -0.81
VRK3-216ENST00000599342 STRADAQ7RTN6 431 aa10□□□□□ -0.81
VRK3-216ENST00000599342 PHLDB2Q86SQ0 1253 aa10□□□□□ -0.81
VRK3-216ENST00000599342 TMPRSS12Q86WS5 348 aa10□□□□□ -0.81
VRK3-216ENST00000599342 PDCD7Q8N8D1 485 aaKnown RBP10□□□□□ -0.81
VRK3-216ENST00000599342 TMEM145Q8NBT3 493 aa10□□□□□ -0.81
VRK3-216ENST00000599342 SLC30A5Q8TAD4 765 aa10□□□□□ -0.81
VRK3-216ENST00000599342 KLK6Q92876 244 aa10□□□□□ -0.81
VRK3-216ENST00000599342 HEPHQ9BQS7 1158 aa10□□□□□ -0.81
VRK3-216ENST00000599342 SELENOOQ9BVL4 669 aa10□□□□□ -0.81
VRK3-216ENST00000599342 CALN1Q9BXU9 219 aa10□□□□□ -0.81
VRK3-216ENST00000599342 HDAC8Q9BY41 377 aa10□□□□□ -0.81
VRK3-216ENST00000599342 RETREG1Q9H6L5 497 aa10□□□□□ -0.81
VRK3-216ENST00000599342 FZD3Q9NPG1 666 aa10□□□□□ -0.81
VRK3-216ENST00000599342 ANO10Q9NW15 660 aa10□□□□□ -0.81
VRK3-216ENST00000599342 FANCLQ9NW38 375 aa10□□□□□ -0.81
VRK3-216ENST00000599342 OR12D3Q9UGF7 316 aa10□□□□□ -0.81
VRK3-216ENST00000599342 HPCAL4Q9UM19 191 aa10□□□□□ -0.81
VRK3-216ENST00000599342 CA5BQ9Y2D0 317 aa10□□□□□ -0.81
VRK3-216ENST00000599342 FCF1Q9Y324 198 aaKnown RBP10□□□□□ -0.81
VRK3-216ENST00000599342 CXorf51AA0A1B0GTR3 108 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 ANKRD62A6NC57 917 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 TRABD2BA6NFA1 517 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 C2CD4BA6NLJ0 364 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 EPHB6O15197 1021 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 ZMPSTE24O75844 475 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 CALB1P05937 261 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 KRT3P12035 628 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 ADRB3P13945 408 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 JUPP14923 745 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 RHOQP17081 205 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 DESP17661 470 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 CHRNB2P17787 502 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 CDK11BP21127 795 aaKnown RBP9.99□□□□□ -0.81
VRK3-216ENST00000599342 ITGB7P26010 798 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 PTPN9P43378 593 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 CCNHP51946 323 aaPredicted RBP9.99□□□□□ -0.81
VRK3-216ENST00000599342 COPB1P53618 953 aaKnown RBP9.99□□□□□ -0.81
VRK3-216ENST00000599342 GSCP56915 257 aaPredicted RBP9.99□□□□□ -0.81
VRK3-216ENST00000599342 MYL5Q02045 173 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 NRG1Q02297 640 aaPredicted RBP9.99□□□□□ -0.81
VRK3-216ENST00000599342 UBXN1Q04323 297 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 POLD3Q15054 466 aaPredicted RBP9.99□□□□□ -0.81
VRK3-216ENST00000599342 STX1AQ16623 288 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 ZNF284Q2VY69 593 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 CCDC14Q49A88 953 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 CARD16Q5EG05 197 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 KIAA1161Q6NSJ0 714 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 FBXL19Q6PCT2 694 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 RBM43Q6ZSC3 357 aaKnown RBP9.99□□□□□ -0.81
VRK3-216ENST00000599342 PTAR1Q7Z6K3 402 aaPredicted RBP9.99□□□□□ -0.81
VRK3-216ENST00000599342 ZNF354CQ86Y25 554 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 MARCH9Q86YJ5 346 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 RYBPQ8N488 228 aaPredicted RBP9.99□□□□□ -0.81
VRK3-216ENST00000599342 JOSD2Q8TAC2 188 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 FAM174AQ8TBP5 190 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 GPT2Q8TD30 523 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 FAM172AQ8WUF8 416 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 TBC1D31Q96DN5 1066 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 TM6SF2Q9BZW4 377 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 OSBPL2Q9H1P3 480 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 ZDHHC6Q9H6R6 413 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 ADAM22Q9P0K1 906 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 DKK4Q9UBT3 224 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 ZNF212Q9UDV6 495 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 DNAI1Q9UI46 699 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 SIK3Q9Y2K2 1263 aa9.99□□□□□ -0.81
VRK3-216ENST00000599342 RAXQ9Y2V3 346 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms