RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 PHTF1Q9UMS5 762 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 SOX13Q9UN79 622 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 YIPF1Q9Y548 306 aa17.33■□□□□ 0.36
SHKBP1-216ENST00000598201 CCDC78A2IDD5 438 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 EDF1O60869 148 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 ALDOAP04075 364 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 KPNA1P52294 538 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 NAB1Q13506 487 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 HNRNPDQ14103 355 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 ANO4Q32M45 955 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 FAM133BQ5BKY9 247 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 KDELC2Q7Z4H8 507 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 LGI2Q8N0V4 545 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 NDUFAF2Q8N183 169 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 CFAP52Q8N1V2 620 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 THOC1Q96FV9 657 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 MRGPRX2Q96LB1 330 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 HERC2P3Q9BVR0 1158 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 PLLPQ9Y342 182 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 CCT8L1PA6NM43 557 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 DNAJB2P25686 324 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 CNTFP26441 200 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 GEMP55040 296 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 MAXP61244 160 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 HECTD3Q5T447 861 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 TPGS2Q68CL5 300 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 ZNF449Q6P9G9 518 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 PDZD8Q8NEN9 1154 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 OVCA2Q8WZ82 227 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 PABPC5Q96DU9 382 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 CDK5RAP1Q96SZ6 601 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 NACA2Q9H009 215 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 ATXN3LQ9H3M9 355 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 NT5MQ9NPB1 228 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 MKS1Q9NXB0 559 aa17.32■□□□□ 0.36
SHKBP1-216ENST00000598201 MAGEB16A2A368 324 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 ACSL4O60488 711 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 RAMP2O60895 175 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 NEBLO76041 1014 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 ITGA2BP08514 1039 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 OR1E1P30953 314 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 ACVRL1P37023 503 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 PLD1Q13393 1074 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 FRG1Q14331 258 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 IHHQ14623 411 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 POLD3Q15054 466 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 HSP90AA5PQ58FG0 334 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 TEDDM1Q5T9Z0 273 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 ZNF354CQ86Y25 554 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 CCDC63Q8NA47 563 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 FATE1Q969F0 183 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 AZIN2Q96A70 460 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 MYRFLQ96LU7 910 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 KIFC1Q9BW19 673 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 SP110Q9HB58 689 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 GKN1Q9NS71 199 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 ABCF3Q9NUQ8 709 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 SPG21Q9NZD8 308 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 GGT7Q9UJ14 662 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 STARD13Q9Y3M8 1113 aa17.31■□□□□ 0.36
SHKBP1-216ENST00000598201 A0A1W2PPC1 479 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 TTC24A2A3L6 582 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 TPP1O14773 563 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 KLKB1P03952 638 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 GP5P40197 560 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 CHRNA4P43681 627 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 SERPINB4P48594 390 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 RENBPP51606 427 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 SERINC3Q13530 473 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 POU6F1Q14863 301 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 KDELC1Q6UW63 502 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 OTOAQ7RTW8 1153 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 CMTR2Q8IYT2 770 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 GRAMD1AQ96CP6 724 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 CPNE1Q99829 537 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 IQCGQ9H095 443 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 RNF38Q9H0F5 515 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 SLC25A51Q9H1U9 297 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 MANSC1Q9H8J5 431 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 DONSONQ9NYP3 566 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 HSFX1Q9UBD0 423 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 ARL2BPQ9Y2Y0 163 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 C2orf78A6NCI8 922 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 F5H5T6 163 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 GOLGA8TH3BQL2 631 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 AP3B1O00203 1094 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 LAG3P18627 525 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 ALDH1A3P47895 512 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 LIG3P49916 1009 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 RAB33AQ14088 237 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 PCSK7Q16549 785 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 C5orf22Q49AR2 442 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 ACBD5Q5T8D3 534 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 MARC1Q5VT66 337 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 KLHDC10Q6PID8 442 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 RANBP10Q6VN20 620 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 DDX53Q86TM3 631 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 KCNMB4Q86W47 210 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 DENND1CQ8IV53 801 aa17.3■□□□□ 0.36
SHKBP1-216ENST00000598201 PGBD5Q8N414 524 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms