RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 NOX1Q9Y5S8 564 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 TAF6LQ9Y6J9 622 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CAPN7Q9Y6W3 813 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 PIAS3Q9Y6X2 628 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 A0A0A6YYK5 440 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 A0A0U1RQF3 1178 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 A0A1B0GVM2 712 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 TCAF2A6NFQ2 919 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 ARL5CA6NH57 179 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CAPN14A8MX76 684 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 B4DGG1 531 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 TMEM150CB9EJG8 249 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 HNRNPRO43390 633 aaKnown RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SCN2BO60939 215 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 MFAP3LO75121 409 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SERPINI2O75830 405 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 MICAL2O94851 1124 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 LARGE1O95461 756 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 KLF8O95600 359 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 IQCF3P0C7M6 154 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CYP2F1P24903 491 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 ITPKBP27987 946 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SERPINB4P48594 390 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CCNG1P51959 295 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 KCNK10P57789 538 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 ZKSCAN8Q15776 578 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CNGA2Q16280 664 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CBWD6Q4V339 395 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 PDSS1Q5T2R2 415 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 RNF43Q68DV7 783 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 BHLHB9Q6PI77 547 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 DLK2Q6UY11 383 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 ADGRA1Q86SQ6 560 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 ATCAYQ86WG3 371 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 GJD3Q8N144 294 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CENPSQ8N2Z9 138 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 DEFB119Q8N690 84 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 PCYOX1LQ8NBM8 494 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 TNIP2Q8NFZ5 429 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CEP19Q96LK0 163 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SERPINB12Q96P63 405 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 APOL2Q9BQE5 337 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 FAM126AQ9BYI3 521 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC29A3Q9BZD2 475 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 PRRG3Q9BZD7 231 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 FAM117AQ9C073 453 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 HPS4Q9NQG7 708 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 GNPTGQ9UJJ9 305 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 FBXO2Q9UK22 296 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 COQ6Q9Y2Z9 468 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SQORQ9Y6N5 450 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 DUSP10Q9Y6W6 482 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CDC42BPBQ9Y5S2 1711 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 KIDINS220Q9ULH0 1771 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 THSD7AQ9UPZ6 1657 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 NCF1BA6NI72 391 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 NCF1CA8MVU1 366 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 TEX28O15482 410 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 FFAR2O15552 330 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CHRNA1P02708 482 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 NCF1P14598 390 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 NEK3P51956 506 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 ANTXR2P58335 489 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SELENOVP59797 346 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 RPS7P62081 194 aaKnown RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 ESRRGP62508 458 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 MRPS22P82650 360 aaKnown RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 PURAQ00577 322 aaKnown RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 ACSM2AQ08AH3 577 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 GRB10Q13322 594 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CSHL1Q14406 222 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SF3B4Q15427 424 aaKnown RBP eCLIP2.97□□□□□ -1.939e-7■■■■■ 33.5
SMCHD1-203ENST00000577880 TCEAL5Q5H9L2 206 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 LDLRAD1Q5T700 205 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 PIK3R6Q5UE93 754 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 C9orf57Q5W0N0 161 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 ACSM2BQ68CK6 577 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 IL27RAQ6UWB1 636 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 ANO5Q75V66 913 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 C17orf64Q86WR6 236 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 VSTM4Q8IW00 320 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 TMEM145Q8NBT3 493 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 GDPD5Q8WTR4 605 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 DDX1Q92499 740 aaKnown RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 STARD8Q92502 1023 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SMARCD2Q92925 531 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 MR1Q95460 341 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 NKD2Q969F2 451 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CNDP1Q96KN2 507 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 UHRF1Q96T88 793 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 C17orf62Q9BQA9 187 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 NDC1Q9BTX1 674 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 TTYH1Q9H313 450 aaPredicted RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SRMSQ9H3Y6 488 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 CAAP1Q9H8G2 361 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 GPAMQ9HCL2 828 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 WDR6Q9NNW5 1121 aaKnown RBP2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 PALMDQ9NP74 551 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 SLAMF7Q9NQ25 335 aa2.97□□□□□ -1.93
SMCHD1-203ENST00000577880 IL17RBQ9NRM6 502 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms