RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 GSTTP1A0A1W2PQM5 241 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CLCA1A8K7I4 914 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 FAM86B1E9PN63 330 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 DDX39AO00148 427 aaKnown RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 NDC80O14777 642 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 HBP1O60381 514 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 PRAMEF4O60810 478 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CTDNEP1O95476 244 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 LY86O95711 162 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 ITGA2BP08514 1039 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CSF1P09603 554 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 FAM86B2P0C5J1 330 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 SMIM10L2AP0DMW4 78 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 SMIM10L2BP0DMW5 78 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CSF2RAP15509 400 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CYP3A7P24462 503 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 SFNP31947 248 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 DEKP35659 375 aaKnown RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 MLH1P40692 756 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 JAK3P52333 1124 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 HK3P52790 923 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CSE1LP55060 971 aaKnown RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 CCL23P55773 120 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 ACTR2P61160 394 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 NKX6-1P78426 367 aaPredicted RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 DSC2Q02487 901 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 LRRC74AQ0VAA2 488 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 MALLQ13021 153 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 SHHQ15465 462 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 RAB30Q15771 203 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 TMEM266Q2M3C6 531 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 Q4G0T1 1027 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 AGBL4Q5VU57 503 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 TAF2Q6P1X5 1199 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 KLHL17Q6TDP4 642 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 NEK8Q86SG6 692 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CCDC170Q8IYT3 715 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 UNC5BQ8IZJ1 945 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 PLA2G15Q8NCC3 412 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 NSUN7Q8NE18 718 aaKnown RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 RDM1Q8NG50 284 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 NRG4Q8WWG1 115 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CRYGNQ8WXF5 182 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 SDCCAG3Q96C92 435 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 NEIL1Q96FI4 390 aaPredicted RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 SLC35A4Q96G79 324 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CALML4Q96GE6 196 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 C8orf76Q96K31 380 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 FAM20AQ96MK3 541 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CCDC43Q96MW1 224 aaKnown RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 COG8Q96MW5 612 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 TWNKQ96RR1 684 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 DDX23Q9BUQ8 820 aaKnown RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 TEKT3Q9BXF9 490 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 FTOQ9C0B1 505 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS53-212ENST00000572259 RNPEPQ9H4A4 650 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 EPS8L2Q9H6S3 715 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 ERVMER34-1Q9H9K5 563 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 ZNF302Q9NR11 478 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 NRBP2Q9NSY0 501 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 GJB4Q9NTQ9 266 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 EIF2B4Q9UI10 523 aaKnown RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 PCDHGB4Q9UN71 923 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 COG5Q9UP83 839 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.41□□□□□ -1.38
VPS53-212ENST00000572259 EMSYQ7Z589 1322 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 LTBP2Q14767 1821 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 ARID1BQ8NFD5 2236 aaPredicted RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 IGLV3-22A0A075B6J6 115 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 A0A1W2PR48 441 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 TMEM110-MUSTN1A8MSY1 372 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 RSPH10B2B2RC85 870 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 KIF28PB7ZC32 967 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 M0QZ92 97 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 UBE2CO00762 179 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 MTSS1O43312 755 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 THAP12O43422 761 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 CCNT1O60563 726 aaKnown RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 SRGAP2O75044 1071 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 ERAL1O75616 437 aaKnown RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 SLC22A3O75751 556 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 PGM3O95394 542 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 TNFRSF6BO95407 300 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 MMP1P03956 469 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 ANXA2P07355 339 aaKnown RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 LTA4HP09960 611 aaKnown RBP6.4□□□□□ -1.38
VPS53-212ENST00000572259 CCDC159P0C7I6 412 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 IQCF3P0C7M6 154 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 RSPH10BP0C881 870 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 CSH1P0DML2 217 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 CSH2P0DML3 217 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 GAAP10253 952 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 KITP10721 976 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 CKBP12277 381 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 MYL4P12829 197 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 ITGB8P26012 769 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 MARK3P27448 753 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 ARL3P36405 182 aa6.4□□□□□ -1.38
VPS53-212ENST00000572259 THPOP40225 353 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms