RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 A0A1B0GTQ1 180 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D3FA6NER0 549 aaPredicted RBP15.19■□□□□ 0.02
CLN3-213ENST00000565047 SMTNL1A8MU46 457 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 C1QTNF9BB2RNN3 333 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D3LB9A6J9 549 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 CCP110O43303 1012 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 CAPNS1P04632 268 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D3HP0C7X1 549 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 C1QTNF9P0C862 333 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 CD38P28907 300 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 ZNF165P49910 485 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 ARL13BQ3SXY8 428 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D3GQ6DHY5 549 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D3CQ6IPX1 549 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 PLPP6Q8IY26 295 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 DRC7Q8IY82 874 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D3Q8IZP1 549 aaPredicted RBP15.19■□□□□ 0.02
CLN3-213ENST00000565047 PYROXD2Q8N2H3 581 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 ARFGAP1Q8N6T3 406 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 ADAMTS14Q8WXS8 1223 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 VCPIP1Q96JH7 1222 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 SPON2Q9BUD6 331 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 SELENOOQ9BVL4 669 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 TNKS2Q9H2K2 1166 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 KLK13Q9UKR3 277 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 NEUROG3Q9Y4Z2 214 aa15.19■□□□□ 0.02
CLN3-213ENST00000565047 LRRC53A6NM62 1247 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 C1QTNF3-AMACRE9PGA6 284 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 CBX4O00257 560 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 FLRT2O43155 660 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 TRIM16O95361 564 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 PROS1P07225 676 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 FTH1P19P0C7X4 201 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 L1CAMP32004 1257 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 PRKCIP41743 596 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 MAPKAPK2P49137 400 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 MAMLD1Q13495 774 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 ARSIQ5FYB1 569 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 RETSATQ6NUM9 610 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 LRSAM1Q6UWE0 723 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 ZNF571Q7Z3V5 609 aaPredicted RBP15.18■□□□□ 0.02
CLN3-213ENST00000565047 SLFN11Q7Z7L1 901 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 SPATS2Q86XZ4 545 aaKnown RBP15.18■□□□□ 0.02
CLN3-213ENST00000565047 CHCHD4Q8N4Q1 142 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 MFSD2AQ8NA29 543 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 KDF1Q8NAX2 398 aaPredicted RBP15.18■□□□□ 0.02
CLN3-213ENST00000565047 ISG20Q96AZ6 181 aaKnown RBP15.18■□□□□ 0.02
CLN3-213ENST00000565047 SERAC1Q96JX3 654 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 ELF4Q99607 663 aaPredicted RBP15.18■□□□□ 0.02
CLN3-213ENST00000565047 CNPY3Q9BT09 278 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 HDAC8Q9BY41 377 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 PREBQ9HCU5 417 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 ATP13A1Q9HD20 1204 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 DNAI1Q9UI46 699 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 FZD10Q9ULW2 581 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 MSRB2Q9Y3D2 182 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 CABIN1Q9Y6J0 2220 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 FREM2Q5SZK8 3169 aa15.18■□□□□ 0.02
CLN3-213ENST00000565047 WASH4PA8MWX3 477 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 BNIP3LO60238 219 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 DFNA5O60443 496 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 LEFTY1O75610 366 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 PRNPP04156 253 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 PBX1P40424 430 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 NXPH1P58417 271 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 ST3GAL2Q16842 350 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 ZNF284Q2VY69 593 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 PRAMEF14Q5SWL7 426 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 NAPEPLDQ6IQ20 393 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 PLEKHA7Q6IQ23 1121 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 NEK5Q6P3R8 708 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 DNAJC24Q6P3W2 148 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 UNQ6494/PRO21346Q6UXR6 183 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 KANSL1Q7Z3B3 1105 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 IQCHQ86VS3 1027 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 DNAAF5Q86Y56 855 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 PCDH20Q8N6Y1 951 aaKnown RBP15.17■□□□□ 0.02
CLN3-213ENST00000565047 PNPLA1Q8N8W4 532 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 TMEM145Q8NBT3 493 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 SAP25Q8TEE9 199 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 SETD7Q8WTS6 366 aaKnown RBP15.17■□□□□ 0.02
CLN3-213ENST00000565047 TBC1D31Q96DN5 1066 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 MCEEQ96PE7 176 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 MAGEH1Q9H213 219 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 IL36AQ9UHA7 158 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 ZFR2Q9UPR6 939 aaKnown RBP15.17■□□□□ 0.02
CLN3-213ENST00000565047 DMTF1Q9Y222 760 aa15.17■□□□□ 0.02
CLN3-213ENST00000565047 FCF1Q9Y324 198 aaKnown RBP15.17■□□□□ 0.02
CLN3-213ENST00000565047 ZZEF1O43149 2961 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 LAMA5O15230 3695 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 TLR4O00206 839 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 DDX3XO00571 662 aaKnown RBP eCLIP15.16■□□□□ 0.021e-10■■■□□ 14.7
CLN3-213ENST00000565047 KDELR3O43731 214 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 KRT37O76014 449 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 ATXN1LP0C7T5 689 aaKnown RBP15.16■□□□□ 0.02
CLN3-213ENST00000565047 CCDC172P0C7W6 258 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 MAT2AP31153 395 aaKnown RBP15.16■□□□□ 0.02
CLN3-213ENST00000565047 NUDT1P36639 197 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 RXRGP48443 463 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 CCT8P50990 548 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms