RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 A0A087WZ62 844 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 DYTNA2CJ06 578 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 MBLAC1A4D2B0 266 aaPredicted RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 ZNF839A8K0R7 811 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 ACOT8O14734 319 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 TREHO43280 583 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 RSL1D1O76021 490 aaKnown RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 CST5P28325 142 aaPredicted RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 GABRB3P28472 473 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 HK2P52789 917 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 TMBIM6P55061 237 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 ADAM17P78536 824 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 BASP1P80723 227 aaKnown RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 CTBSQ01459 385 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 MBTD1Q05BQ5 628 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 KCNJ11Q14654 390 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 KCNA10Q16322 511 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 SNRNP35Q16560 246 aaKnown RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 TAZQ16635 292 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 INSCQ1MX18 579 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 ATP13A4Q4VNC1 1196 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 EPGNQ6UW88 154 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 ZCCHC23Q6ZST2 131 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 PEX5LQ8IYB4 626 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 THNSL1Q8IYQ7 743 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 SIX6OS1Q8N1H7 587 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 C7orf31Q8N865 590 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 ATP6V0D2Q8N8Y2 350 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 SORT1Q99523 831 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 FDXACB1Q9BRP7 624 aaPredicted RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 NPLQ9BXD5 320 aaPredicted RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 MINDY3Q9H8M7 445 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 MOV10Q9HCE1 1003 aaKnown RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 C1orf112Q9NSG2 853 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 KLHL11Q9NVR0 708 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 INO80B-WBP1J3KQ70 363 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 MSCO60682 206 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 TADA2AO75478 443 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 RNASEH2AO75792 299 aaKnown RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 ASGR1P07306 291 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 ADRB2P07550 413 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 GARTP22102 1010 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 GLDCP23378 1020 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 HOXC8P31273 242 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 GDF10P55107 478 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 C6orf183Q5T699 404 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 CCSAPQ6IQ19 270 aaPredicted RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 XKR5Q6UX68 686 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 CYS1Q717R9 158 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 ITIH5Q86UX2 942 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 ADGRF2Q8IZF7 708 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 EFCAB3Q8N7B9 438 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 PNPT1Q8TCS8 783 aaKnown RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 TFAP2CQ92754 450 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 ZBTB45Q96K62 511 aaPredicted RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 EFHD1Q9BUP0 239 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 YTHDF1Q9BYJ9 559 aaKnown RBP11.06□□□□□ -0.64
USP3-206ENST00000558157 SHCBP1LQ9BZQ2 653 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 HAPLN2Q9GZV7 340 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 MAGEE1Q9HCI5 957 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 SPO11Q9Y5K1 396 aa11.06□□□□□ -0.64
USP3-206ENST00000558157 SMIM35A0A1B0GVV1 85 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 A0A1W2PPW3 197 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 EIF3FO00303 357 aaPredicted RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 HTRA2O43464 458 aaPredicted RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 DGKIO75912 1065 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 APOEP02649 317 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 CALB1P05937 261 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 MYF6P23409 242 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 PSMD8P48556 350 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 ABCE1P61221 599 aaKnown RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 NRF1Q16656 503 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 NHSL2Q5HYW2 709 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 AARS2Q5JTZ9 985 aaKnown RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 PPP4R4Q6NUP7 873 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 CBWD2Q8IUF1 395 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 SLC7A5P1Q8MH63 180 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 MFSD2AQ8NA29 543 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 TAS1R2Q8TE23 839 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 ASB9Q96DX5 294 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 LENG8Q96PV6 779 aaPredicted RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 ZNF347Q96SE7 839 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 MRPL4Q9BYD3 311 aaKnown RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 NFKBIZQ9BYH8 718 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 VRTNQ9H8Y1 702 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 HMX1Q9NP08 348 aaPredicted RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 C8orf4Q9NR00 106 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 QPCTLQ9NXS2 382 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 SUCOQ9UBS9 1254 aaKnown RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 ZC3H7BQ9UGR2 993 aaKnown RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 DCDC2Q9UHG0 476 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 CPQQ9Y646 472 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 FAM159BA6NKW6 160 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 B4GALT5O43286 388 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 ZBTB14O43829 449 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 PLIN3O60664 434 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 CLPXO76031 633 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 KRT7P08729 469 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 IQCF3P0C7M6 154 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 C7P10643 843 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms