RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 CHRNGP07510 517 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 TXNP10599 105 aaKnown RBP16.54■□□□□ 0.24
SHMT2-232ENST00000557487 EPHA3P29320 983 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 STX5Q13190 355 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 PPM1LQ5SGD2 360 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 LINC00523Q86TU6 105 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 ANKRD13AQ8IZ07 590 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 LILRA2Q8N149 483 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 TMEM151AQ8N4L1 468 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 AFAP1L2Q8N4X5 818 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 ITFG2Q969R8 447 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 ZNF597Q96LX8 424 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 PRPF18Q99633 342 aaKnown RBP16.54■□□□□ 0.24
SHMT2-232ENST00000557487 GRIP2Q9C0E4 1043 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 FZD1Q9UP38 647 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 AK5Q9Y6K8 562 aa16.54■□□□□ 0.24
SHMT2-232ENST00000557487 DNAJC25-GNG10A0A024R161 153 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 NEMP1O14524 444 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 CD4P01730 458 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 SPATA31D3P0C874 917 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 ZNF23P17027 643 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 ADORA2BP29275 332 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 PNPLA4P41247 253 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 TUBA4AP68366 448 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 MS4A2Q01362 244 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 SCAPQ12770 1279 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 NOGQ13253 232 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 LAMC2Q13753 1193 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 PTK2BQ14289 1009 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 PRPSAP1Q14558 356 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 TREML2Q5T2D2 321 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 NAPEPLDQ6IQ20 393 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 SPATA31D4Q6ZUB0 917 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 ZC3HC1Q86WB0 502 aaKnown RBP16.53■□□□□ 0.24
SHMT2-232ENST00000557487 RASAL3Q86YV0 1011 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 CHERPQ8IWX8 916 aaKnown RBP16.53■□□□□ 0.24
SHMT2-232ENST00000557487 CEP70Q8NHQ1 597 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 TNIP3Q96KP6 325 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 ZNF560Q96MR9 790 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 NUF2Q9BZD4 464 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 SNX25Q9H3E2 840 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 OCEL1Q9H607 264 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 GDAP2Q9NXN4 497 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 THSD7BQ9C0I4 1608 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 IRF6O14896 467 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 CFLARO15519 480 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 VAPBO95292 243 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 FAM200BP0CF97 657 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 GNL1P36915 607 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-232ENST00000557487 DNAJB13P59910 316 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 IGBP1P78318 339 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 CDH17Q12864 832 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 PPIL2Q13356 520 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 DCTN2Q13561 401 aaKnown RBP16.53■□□□□ 0.24
SHMT2-232ENST00000557487 TRIM25Q14258 630 aaKnown RBP16.53■□□□□ 0.24
SHMT2-232ENST00000557487 KIZQ2M2Z5 673 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 C9orf57Q5W0N0 161 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 PIWIL4Q7Z3Z4 852 aaKnown RBP16.53■□□□□ 0.24
SHMT2-232ENST00000557487 CNKSR2Q8WXI2 1034 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 KCTD13Q8WZ19 329 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 WNT8BQ93098 351 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 HDAC11Q96DB2 347 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 ATXN7L3BQ96GX2 97 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 SLC2A13Q96QE2 648 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 EFHD1Q9BUP0 239 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 KIFC1Q9BW19 673 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 UNC93B1Q9H1C4 597 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 CAB39LQ9H9S4 337 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 IARS2Q9NSE4 1012 aaKnown RBP16.53■□□□□ 0.24
SHMT2-232ENST00000557487 ZDHHC2Q9UIJ5 367 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 APPL1Q9UKG1 709 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 SARDHQ9UL12 918 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 SLC39A10Q9ULF5 831 aa16.53■□□□□ 0.24
SHMT2-232ENST00000557487 UBQLN1Q9UMX0 589 aaKnown RBP16.53■□□□□ 0.24
SHMT2-232ENST00000557487 COPG1Q9Y678 874 aaKnown RBP16.53■□□□□ 0.24
SHMT2-232ENST00000557487 E2F8A0AVK6 867 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 TCAF2A6NFQ2 919 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 TARM1B6A8C7 271 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 TRMUO75648 421 aaKnown RBP16.52■□□□□ 0.23
SHMT2-232ENST00000557487 ZNF26P17031 533 aaPredicted RBP16.52■□□□□ 0.23
SHMT2-232ENST00000557487 NAGLUP54802 743 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 PKNOX1P55347 436 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 ZNF33AQ06730 810 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 USP10Q14694 798 aaKnown RBP16.52■□□□□ 0.23
SHMT2-232ENST00000557487 PCBP1Q15365 356 aaKnown RBP eCLIP16.52■□□□□ 0.23
SHMT2-232ENST00000557487 DLG2Q15700 870 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 PSMD5Q16401 504 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 DCAF6Q58WW2 860 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 NXNQ6DKJ4 435 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 ERI1Q8IV48 349 aaKnown RBP16.52■□□□□ 0.23
SHMT2-232ENST00000557487 KLHDC8BQ8IXV7 354 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 HM13Q8TCT9 377 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 EME1Q96AY2 570 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 FAM149B1Q96BN6 582 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 SCYL1Q96KG9 808 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 UHRF1Q96T88 793 aaPredicted RBP16.52■□□□□ 0.23
SHMT2-232ENST00000557487 DPEP3Q9H4B8 488 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 GALNT8Q9NY28 637 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 HSFX1Q9UBD0 423 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 ACOT9Q9Y305 439 aa16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms