RNA–Protein interactions for RNA: ENST00000557356.5

PSEN1-222, Transcript of presenilin 1, human

TSL 4

Gene PSEN1, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSEN1-222	ENST00000557356	PIP4K2C	Q8TBX8	421 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	NSMCE1	Q8WV22	266 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	RFFL	Q8WZ73	363 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	ARHGEF26	Q96DR7	871 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	ERLEC1	Q96DZ1	483 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	GDAP1L1	Q96MZ0	367 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	CHP1	Q99653	195 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	SNRNP25	Q9BV90	132 aa	Known RBP	8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	OSBPL1A	Q9BXW6	950 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	RAB6C	Q9H0N0	254 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	SLC6A17	Q9H1V8	727 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	NEUROG2	Q9H2A3	272 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	IL36A	Q9UHA7	158 aa		8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	MYO18A	Q92614	2054 aa	Known RBP	8.01	□□□□□ -1.13
PSEN1-222	ENST00000557356	TBC1D3D	A0A087WVF3	549 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TBC1D3I	A0A087WXS9	549 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TBC1D3E	A0A087X179	549 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TBC1D3K	A0A087X1G2	549 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356		A0A1W2PP55	124 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TBC1D3F	A6NER0	549 aa	Predicted RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TBC1D3L	B9A6J9	549 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	KPNA3	O00505	521 aa	Predicted RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	SLC30A4	O14863	429 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	PROSC	O94903	275 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	IGSF6	O95976	241 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	GSR	P00390	522 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	MT-CO1	P00395	513 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TBC1D3H	P0C7X1	549 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	RARA	P10276	462 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ERCC2	P18074	760 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ITPKA	P23677	461 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	NFKBIA	P25963	317 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ACSL1	P33121	698 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ACVRL1	P37023	503 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	MAGEA1	P43355	309 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	MAPK8	P45983	427 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	PSMD8	P48556	350 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	AFF3	P51826	1226 aa	Known RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	RACK1	P63244	317 aa	Known RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	IRX4	P78413	519 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ZNF252P-AS1	Q0IIN9	211 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	HNRNPD	Q14103	355 aa	Known RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ZFYVE27	Q5T4F4	411 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ARTN	Q5T4W7	220 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	LRRC38	Q5VT99	294 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	DCAF12L1	Q5VU92	463 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TBC1D3G	Q6DHY5	549 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TBC1D3C	Q6IPX1	549 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	FBXL19	Q6PCT2	694 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TMCO3	Q6UWJ1	677 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	LINGO4	Q6UY18	593 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356		Q6ZVU0	165 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ARMCX6	Q7L4S7	300 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ERMP1	Q7Z2K6	904 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	POLN	Q7Z5Q5	900 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	PRPF39	Q86UA1	669 aa	Known RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	VSIG1	Q86XK7	387 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TBC1D3	Q8IZP1	549 aa	Predicted RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ARFGAP1	Q8N6T3	406 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	KCTD6	Q8NC69	237 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	OR14C36	Q8NHC7	312 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	SLC35G2	Q8TBE7	412 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	FAM174A	Q8TBP5	190 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	HCAR2	Q8TDS4	363 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	UBE2Q2	Q8WVN8	375 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	RAB7B	Q96AH8	199 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	FEM1C	Q96JP0	617 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	HDAC8	Q9BY41	377 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	CPEB1	Q9BZB8	566 aa	Known RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TRIM7	Q9C029	511 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	MTG2	Q9H4K7	406 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	PREB	Q9HCU5	417 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	PARD6A	Q9NPB6	346 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	TMEM9B	Q9NQ34	198 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	DLL3	Q9NYJ7	618 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	CWC15	Q9P013	229 aa	Known RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	HECA	Q9UBI9	543 aa	Predicted RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	NENF	Q9UMX5	172 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	DMTF1	Q9Y222	760 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356	MFHAS1	Q9Y4C4	1052 aa		8	□□□□□ -1.13
PSEN1-222	ENST00000557356	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	8	□□□□□ -1.13
PSEN1-222	ENST00000557356		A0A1W2PQ67	120 aa		7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	FAM47DP	A6NHR8	397 aa		7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	ZNF487	B1APH4	448 aa		7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356		K7ERQ8	282 aa		7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	ARHGAP33	O14559	1287 aa		7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	SMAD6	O43541	496 aa	Known RBP	7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	RNGTT	O60942	597 aa	Known RBP	7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	MTA2	O94776	668 aa		7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	FSBP	O95073	299 aa		7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	LCA5L	O95447	670 aa		7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	ITGB7	P26010	798 aa		7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	CDC25B	P30305	580 aa		7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	HSPA9	P38646	679 aa	Known RBP	7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	NOP2	P46087	812 aa	Known RBP	7.99	□□□□□ -1.13
PSEN1-222	ENST00000557356	CSNK1D	P48730	415 aa		7.99	□□□□□ -1.13

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms