RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 PPFIA2O75334 1257 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 APOEP02649 317 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 SRCP12931 536 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 BRD2P25440 801 aaKnown RBP13.23□□□□□ -0.29
VPS29-211ENST00000553128 CHRNA3P32297 505 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 NUCB2P80303 420 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 LRMPQ12912 555 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 ADAM9Q13443 819 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 PDE1CQ14123 709 aaPredicted RBP13.23□□□□□ -0.29
VPS29-211ENST00000553128 RAB11FIP2Q7L804 512 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 CEP57L1Q8IYX8 460 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 FAM149B1Q96BN6 582 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 BTN2A3PQ96KV6 586 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 IL12RB2Q99665 862 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 FUCA2Q9BTY2 467 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 SLC17A9Q9BYT1 436 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 FAM13BQ9NYF5 915 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 NCKIPSDQ9NZQ3 722 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 ACSL6Q9UKU0 697 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 MAN2B2Q9Y2E5 1009 aa13.23□□□□□ -0.29
VPS29-211ENST00000553128 TCAF2A6NFQ2 919 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 KCNU1A8MYU2 1149 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 H3BM21 787 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 SMAD6O43541 496 aaKnown RBP13.22□□□□□ -0.29
VPS29-211ENST00000553128 SNAP91O60641 907 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 FBXO21O94952 628 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 IGLV3-25P01717 112 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 CELA2BP08218 269 aaPredicted RBP13.22□□□□□ -0.29
VPS29-211ENST00000553128 PRR29P0C7W0 189 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 LIPCP11150 499 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 RRM1P23921 792 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 GGCXP38435 758 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 ADKP55263 362 aaKnown RBP13.22□□□□□ -0.29
VPS29-211ENST00000553128 C4orf17Q53FE4 359 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 ARSIQ5FYB1 569 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 FOXD4L5Q5VV16 416 aaPredicted RBP13.22□□□□□ -0.29
VPS29-211ENST00000553128 FBXL22Q6P050 247 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 TMEM270Q6UE05 265 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 ERN2Q76MJ5 926 aaKnown RBP13.22□□□□□ -0.29
VPS29-211ENST00000553128 ZFAND4Q86XD8 727 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 DCP2Q8IU60 420 aaKnown RBP13.22□□□□□ -0.29
VPS29-211ENST00000553128 GRIN3AQ8TCU5 1115 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 FOXD4L4Q8WXT5 416 aaPredicted RBP13.22□□□□□ -0.29
VPS29-211ENST00000553128 PSMG3-AS1Q96PY0 264 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 PSMB7Q99436 277 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 KLF6Q99612 283 aaPredicted RBP13.22□□□□□ -0.29
VPS29-211ENST00000553128 CLPBQ9H078 707 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 GEMIN8Q9NWZ8 242 aaKnown RBP13.22□□□□□ -0.29
VPS29-211ENST00000553128 PISDQ9UG56 409 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 SEPT3Q9UH03 358 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 VPS28Q9UK41 221 aa13.22□□□□□ -0.29
VPS29-211ENST00000553128 NOTCH2Q04721 2471 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 TPP1O14773 563 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 TRUB2O95900 331 aaKnown RBP13.21□□□□□ -0.29
VPS29-211ENST00000553128 SFTPCP11686 197 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 ITIH1P19827 911 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 RABIFP47224 123 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 INHBCP55103 352 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 FOXK1P85037 733 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 EIF4EBP2Q13542 120 aaPredicted RBP13.21□□□□□ -0.29
VPS29-211ENST00000553128 CNGA2Q16280 664 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 ZCWPW2Q504Y3 356 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 PRRT3Q5FWE3 981 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 MANEAQ5SRI9 462 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 TMIEQ8NEW7 156 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 KAT5Q92993 513 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 HSFY1Q96LI6 401 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 ZNF396Q96N95 335 aaPredicted RBP13.21□□□□□ -0.29
VPS29-211ENST00000553128 LRRC61Q9BV99 259 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 HDAC8Q9BY41 377 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 TNKS2Q9H2K2 1166 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 FOXJ2Q9P0K8 574 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 IPO11Q9UI26 975 aaKnown RBP13.21□□□□□ -0.29
VPS29-211ENST00000553128 KIAA1257Q9ULG3 409 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 PADI4Q9UM07 663 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 COQ4Q9Y3A0 265 aa13.21□□□□□ -0.29
VPS29-211ENST00000553128 SPTAN1Q13813 2472 aaKnown RBP13.2□□□□□ -0.3
VPS29-211ENST00000553128 ZFC3H1O60293 1989 aaKnown RBP13.2□□□□□ -0.3
VPS29-211ENST00000553128 PRAMEF33A0A0G2JMD5 474 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 A0A1W2PQM1 296 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 D6RAR5 112 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 YY2O15391 372 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 PRAMEF10O60809 474 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 LEFTY1O75610 366 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 ENDOD1O94919 500 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 ETV5P41161 510 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 ME1P48163 572 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 CCL7P80098 99 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 TAF5Q15542 800 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 TCEA2Q15560 299 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 RABGAP1LQ5R372 815 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 LINGO4Q6UY18 593 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 SDR16C5Q8N3Y7 309 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 ATP11CQ8NB49 1132 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 KYQ8NBH2 561 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 FAM174AQ8TBP5 190 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 ZNF564Q8TBZ8 553 aaPredicted RBP13.2□□□□□ -0.3
VPS29-211ENST00000553128 NAT6Q93015 286 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 CCDC74AQ96AQ1 378 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 RPRD1AQ96P16 312 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms