RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FBXW11Q9UKB1 542 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 ADAM28Q9UKQ2 775 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 RUVBL2Q9Y230 463 aaKnown RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 PDHXO00330 501 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 LRIG2O94898 1065 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 OR6B1O95007 311 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 PGM3O95394 542 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 PGK1P00558 417 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 AHSGP02765 367 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 MPOP05164 745 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 FAM200BP0CF97 657 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 SRGAP2BP0DMP2 458 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 ENO3P13929 434 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 KCNE1P15382 129 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 YBX3P16989 372 aaKnown RBP eCLIP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 WARSP23381 471 aaKnown RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 LAMA2P24043 3122 aaKnown RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 GSTT1P30711 240 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 MS4A2Q01362 244 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 SATB1Q01826 763 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 ROR2Q01974 943 aaKnown RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 CEACAM7Q14002 265 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 GK3PQ14409 553 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 USP10Q14694 798 aaKnown RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 POU6F1Q14863 301 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 TLR1Q15399 786 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 MMEL1Q495T6 779 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 LIN52Q52LA3 116 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 FSCBQ5H9T9 825 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 RASIP1Q5U651 963 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 NXNQ6DKJ4 435 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 RPS27LQ71UM5 84 aaKnown RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 BHLHA9Q7RTU4 235 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 TMC7Q7Z402 723 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 ZC3HC1Q86WB0 502 aaKnown RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 APLFQ8IW19 511 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 DSELQ8IZU8 1212 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 CENPLQ8N0S6 344 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 FSTL5Q8N475 847 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-213ENST00000552720 C3orf58Q8NDZ4 430 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 KCTD13Q8WZ19 329 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 JADE3Q92613 823 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 PCED1BQ96HM7 432 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 CDRT15Q96T59 188 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 SH3GL3Q99963 347 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 PAAF1Q9BRP4 392 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 TRIM4Q9C037 500 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 DRC3Q9H069 523 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 ATXN3LQ9H3M9 355 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 FAM96AQ9H5X1 160 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 XPR1Q9UBH6 696 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 OR12D3Q9UGF7 316 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 SLC2A6Q9UGQ3 507 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 CLEC11AQ9Y240 323 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 FIS1Q9Y3D6 152 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 CROCCQ5TZA2 2017 aa7.62□□□□□ -1.19
LIMA1-213ENST00000552720 NEMP2A6NFY4 417 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TMEM114B3SHH9 223 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 AURKAO14965 403 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 GPR37O15354 613 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 HDAC3O15379 428 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TIMM44O43615 452 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TFEBP19484 476 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TCN1P20061 433 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-213ENST00000552720 PNPLA4P41247 253 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 ALDH1A3P47895 512 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 NUMBP49757 651 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 CSRP3P50461 194 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 RPL14P50914 215 aaKnown RBP7.61□□□□□ -1.19
LIMA1-213ENST00000552720 FOLH1Q04609 750 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 PDK3Q15120 406 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 XKR4Q5GH76 650 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TSTD2Q5T7W7 516 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 SEL1L3Q68CR1 1132 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 FAM35AQ86V20 835 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 SATL1Q86VE3 508 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 CCNYL1Q8N7R7 359 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 SNX31Q8N9S9 440 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 LPPQ93052 612 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 NXNL1Q96CM4 212 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 HDAC11Q96DB2 347 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TEKT5Q96M29 485 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 NPAS2Q99743 824 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 COLEC11Q9BWP8 271 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 SPATA16Q9BXB7 569 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 SIK2Q9H0K1 926 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 ZNF408Q9H9D4 720 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TRPM7Q96QT4 1865 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TANC1Q9C0D5 1861 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 MYO16Q9Y6X6 1858 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TDRD15B5MCY1 1934 aaKnown RBP7.61□□□□□ -1.19
LIMA1-213ENST00000552720 PTPRDP23468 1912 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 DFFAO00273 331 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 GABRDO14764 452 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 DLX3O60479 287 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 VAPBO95292 243 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 SPATA31D3P0C874 917 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 HOXD8P13378 290 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-213ENST00000552720 RAB27AP51159 221 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 CLCNKBP51801 687 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms