RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 CENPLQ8N0S6 344 aaPredicted RBP16.06■□□□□ 0.16
LDLR-204ENST00000545707 LSMEM2Q8N112 164 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 SREK1Q8WXA9 508 aaKnown RBP16.06■□□□□ 0.16
LDLR-204ENST00000545707 PCED1BQ96HM7 432 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 TEKT5Q96M29 485 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 FAM192AQ9GZU8 254 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 DRC3Q9H069 523 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 SUDS3Q9H7L9 328 aaPredicted RBP16.06■□□□□ 0.16
LDLR-204ENST00000545707 FIS1Q9Y3D6 152 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 RAP2CQ9Y3L5 183 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 AK5Q9Y6K8 562 aa16.06■□□□□ 0.16
LDLR-204ENST00000545707 RGSL1A5PLK6 1076 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 RRN3P2A6NIE6 340 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 FBXO21O94952 628 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 OR6B1O95007 311 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 VAPBO95292 243 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 PRDX6P30041 224 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 NUMBP49757 651 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 SNAPC2Q13487 334 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 TLR1Q15399 786 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 ANO4Q32M45 955 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 C11orf91Q3C1V1 193 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 LIPMQ5VYY2 423 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 METTL21CQ5VZV1 264 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 TWF2Q6IBS0 349 aaKnown RBP16.05■□□□□ 0.16
LDLR-204ENST00000545707 RWDD4Q6NW29 188 aaKnown RBP16.05■□□□□ 0.16
LDLR-204ENST00000545707 ZYG11AQ6WRX3 759 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 ST13P4Q8IZP2 240 aaPredicted RBP16.05■□□□□ 0.16
LDLR-204ENST00000545707 KYQ8NBH2 561 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 ICA1LQ8NDH6 482 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 ZSCAN18Q8TBC5 510 aaPredicted RBP16.05■□□□□ 0.16
LDLR-204ENST00000545707 NXNL1Q96CM4 212 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 ZNF419Q96HQ0 510 aaPredicted RBP16.05■□□□□ 0.16
LDLR-204ENST00000545707 MAML3Q96JK9 1138 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 SGIP1Q9BQI5 828 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 IL22Q9GZX6 179 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 SIK2Q9H0K1 926 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 ATXN3LQ9H3M9 355 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 WDCPQ9H6R7 721 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 STK39Q9UEW8 545 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 DTNAQ9Y4J8 743 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 DFFAO00273 331 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 DLX3O60479 287 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 SNUPNO95149 360 aaKnown RBP16.05■□□□□ 0.16
LDLR-204ENST00000545707 NPY2RP49146 381 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 CEACAM7Q14002 265 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 CYLC2Q14093 348 aaPredicted RBP16.05■□□□□ 0.16
LDLR-204ENST00000545707 GK3PQ14409 553 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 RPS27LQ71UM5 84 aaKnown RBP16.05■□□□□ 0.16
LDLR-204ENST00000545707 SATL1Q86VE3 508 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 PQLC1Q8N2U9 271 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 TOP6BLQ8N6T0 577 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 HDAC11Q96DB2 347 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 SENP8Q96LD8 212 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 GPR22Q99680 433 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 VCX3BQ9H321 246 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 COPS7BQ9H9Q2 264 aaPredicted RBP16.05■□□□□ 0.16
LDLR-204ENST00000545707 PRDM16Q9HAZ2 1276 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 XPR1Q9UBH6 696 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 SLC2A6Q9UGQ3 507 aa16.05■□□□□ 0.16
LDLR-204ENST00000545707 XPOTO43592 962 aaKnown RBP16.04■□□□□ 0.16
LDLR-204ENST00000545707 PGK1P00558 417 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 RAB27AP51159 221 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 CSE1LP55060 971 aaKnown RBP16.04■□□□□ 0.16
LDLR-204ENST00000545707 GALNT2Q10471 571 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 CDH17Q12864 832 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 FLOT2Q14254 428 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 XKR4Q5GH76 650 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 ESRP1Q6NXG1 681 aaKnown RBP16.04■□□□□ 0.16
LDLR-204ENST00000545707 FAM35AQ86V20 835 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 IPMKQ8NFU5 416 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 NPLOC4Q8TAT6 608 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 RNF34Q969K3 372 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 NTAN1Q96AB6 310 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 NPAS2Q99743 824 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 TINF2Q9BSI4 451 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 SHROOM3Q8TF72 1996 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 SMIM35A0A1B0GVV1 85 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 NEMP2A6NFY4 417 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 GABRDO14764 452 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 HOXD8P13378 290 aaPredicted RBP16.04■□□□□ 0.16
LDLR-204ENST00000545707 ZNF423Q2M1K9 1284 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 UGT2A3Q6UWM9 527 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 GPR142Q7Z601 462 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 DCUN1D1Q96GG9 259 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 SLC9A7Q96T83 725 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 PSMD13Q9UNM6 376 aa16.04■□□□□ 0.16
LDLR-204ENST00000545707 MYOCOSA0A1B0GUC4 107 aa16.03■□□□□ 0.16
LDLR-204ENST00000545707 MAGEB16A2A368 324 aa16.03■□□□□ 0.16
LDLR-204ENST00000545707 CASQ2O14958 399 aaPredicted RBP16.03■□□□□ 0.16
LDLR-204ENST00000545707 SCAPQ12770 1279 aa16.03■□□□□ 0.16
LDLR-204ENST00000545707 OGFRL1Q5TC84 451 aaPredicted RBP16.03■□□□□ 0.16
LDLR-204ENST00000545707 AP1ARQ63HQ0 302 aa16.03■□□□□ 0.16
LDLR-204ENST00000545707 ITPRIPL1Q6GPH6 555 aa16.03■□□□□ 0.16
LDLR-204ENST00000545707 BNC2Q6ZN30 1099 aaPredicted RBP16.03■□□□□ 0.16
LDLR-204ENST00000545707 LILRA2Q8N149 483 aa16.03■□□□□ 0.16
LDLR-204ENST00000545707 SNX31Q8N9S9 440 aa16.03■□□□□ 0.16
LDLR-204ENST00000545707 SLC10A4Q96EP9 437 aa16.03■□□□□ 0.16
LDLR-204ENST00000545707 TMA16Q96EY4 203 aaKnown RBP16.03■□□□□ 0.16
LDLR-204ENST00000545707 PAAF1Q9BRP4 392 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms