RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ARHGAP18Q8N392 663 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 SLC25A41Q8N5S1 370 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 RAB3IL1Q8TBN0 382 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 SH3TC2Q8TF17 1288 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 INPP5DQ92835 1189 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 IGSF8Q969P0 613 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 PABPC5Q96DU9 382 aaKnown RBP16.58■□□□□ 0.25
COL4A1-204ENST00000543140 NT5MQ9NPB1 228 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 COPG2Q9UBF2 871 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 MIA3Q5JRA6 1907 aa16.58■□□□□ 0.25
COL4A1-204ENST00000543140 OR6C75A6NL08 312 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 FGFR3P22607 806 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 RASSF2P50749 326 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 GEMP55040 296 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 CTBP1Q13363 440 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 SEPT6Q14141 434 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 FRG1Q14331 258 aaKnown RBP16.58■□□□□ 0.24
COL4A1-204ENST00000543140 GRM3Q14832 879 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 ATG14Q6ZNE5 492 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 ZNF683Q8IZ20 524 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 SCLYQ96I15 445 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 MRGPRX2Q96LB1 330 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 EBF4Q9BQW3 602 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 ZYG11BQ9C0D3 744 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.58■□□□□ 0.24
COL4A1-204ENST00000543140 PPARGC1AQ9UBK2 798 aaKnown RBP16.58■□□□□ 0.24
COL4A1-204ENST00000543140 PHF24Q9UPV7 400 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 GREB1Q4ZG55 1949 aa16.58■□□□□ 0.24
COL4A1-204ENST00000543140 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.57■□□□□ 0.24
COL4A1-204ENST00000543140 SLC12A8A0AV02 714 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 DNAJC6O75061 913 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 C2P06681 752 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 NRG1Q02297 640 aaPredicted RBP16.57■□□□□ 0.24
COL4A1-204ENST00000543140 SLC10A7Q0GE19 358 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 PDPK2PQ6A1A2 396 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 FBXL22Q6P050 247 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 DENND6AQ8IWF6 608 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 FAM126BQ8IXS8 530 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 RILPQ96NA2 401 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 CCSER2Q9H7U1 834 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 PRDM5Q9NQX1 630 aaPredicted RBP16.57■□□□□ 0.24
COL4A1-204ENST00000543140 TLR8Q9NR97 1041 aaKnown RBP16.57■□□□□ 0.24
COL4A1-204ENST00000543140 DNAJC16Q9Y2G8 782 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 L3MBTL1Q9Y468 752 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 TBKBP1A7MCY6 615 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 AP3B1O00203 1094 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 PQBP1O60828 265 aaKnown RBP16.57■□□□□ 0.24
COL4A1-204ENST00000543140 COL6A1P12109 1028 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 CPA3P15088 417 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 ARRB2P32121 409 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 ADRA1AP35348 466 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 AVPR1AP37288 418 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 MAGEA12P43365 314 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 BFSP2Q13515 415 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 ITGA9Q13797 1035 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 INSCQ1MX18 579 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 SPDYAQ5MJ70 313 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 ICE2Q659A1 982 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 RAPH1Q70E73 1250 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 KLHDC8BQ8IXV7 354 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 AGAP11Q8TF27 550 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 PSMG2Q969U7 264 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 PTCD3Q96EY7 689 aaKnown RBP16.57■□□□□ 0.24
COL4A1-204ENST00000543140 NSL1Q96IY1 281 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.57■□□□□ 0.24
COL4A1-204ENST00000543140 ELAC1Q9H777 363 aaKnown RBP16.57■□□□□ 0.24
COL4A1-204ENST00000543140 IL37Q9NZH6 218 aa16.57■□□□□ 0.24
COL4A1-204ENST00000543140 CPSF2Q9P2I0 782 aaKnown RBP16.57■□□□□ 0.24
COL4A1-204ENST00000543140 PHGDHO43175 533 aaKnown RBP16.56■□□□□ 0.24
COL4A1-204ENST00000543140 TIMM44O43615 452 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 PEX11BO96011 259 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 RHOQP17081 205 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 GABRB3P28472 473 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 PTPN4P29074 926 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 CDK7P50613 346 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 WNT3AP56704 352 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 MPP1Q00013 466 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 CNGA3Q16281 694 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 ANO4Q32M45 955 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 ZC3HC1Q86WB0 502 aaKnown RBP16.56■□□□□ 0.24
COL4A1-204ENST00000543140 UMODL1-AS1Q8N2C9 162 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 ATP6V0D2Q8N8Y2 350 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 PPHLN1Q8NEY8 458 aaKnown RBP16.56■□□□□ 0.24
COL4A1-204ENST00000543140 BCL7CQ8WUZ0 217 aaPredicted RBP16.56■□□□□ 0.24
COL4A1-204ENST00000543140 BTN2A3PQ96KV6 586 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 MCMBPQ9BTE3 642 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 WASH4PA8MWX3 477 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 AHSGP02765 367 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 GALTP07902 379 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 RALBP11234 206 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 RPL17P18621 184 aaKnown RBP16.56■□□□□ 0.24
COL4A1-204ENST00000543140 ETFBP38117 255 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 ALDH18A1P54886 795 aaKnown RBP16.56■□□□□ 0.24
COL4A1-204ENST00000543140 CSE1LP55060 971 aaKnown RBP16.56■□□□□ 0.24
COL4A1-204ENST00000543140 GPR17Q13304 367 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 TRIP4Q15650 581 aaPredicted RBP16.56■□□□□ 0.24
COL4A1-204ENST00000543140 SLAIN1Q8ND83 568 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 SEPT8Q92599 483 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 ISL2Q96A47 359 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 MYEOVQ96EZ4 313 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms