RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 DUSP3P51452 185 aaPredicted RBP18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 CDH4P55283 916 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 ERN2Q76MJ5 926 aaKnown RBP18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 PTAR1Q7Z6K3 402 aaPredicted RBP18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 WDTC1Q8N5D0 677 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 ATP11CQ8NB49 1132 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 ZNF548Q8NEK5 533 aaPredicted RBP18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 MAPK15Q8TD08 544 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 SLC46A1Q96NT5 459 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 CPXM1Q96SM3 734 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 DUSP23Q9BVJ7 150 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 INTS2Q9H0H0 1204 aaKnown RBP18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 MUC3BQ9H195 1237 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 KLF15Q9UIH9 416 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 ENTPD2Q9Y5L3 495 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 BOD1L1Q8NFC6 3051 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 I6L893 689 aaPredicted RBP18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 PSMA7O14818 248 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 THAP12O43422 761 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 GLI1P08151 1106 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 GNA15P30679 374 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 HNRNPKP61978 463 aaKnown RBP eCLIP18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 ALFQ53S48 1182 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 ARSIQ5FYB1 569 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 OTUD1Q5VV17 481 aaPredicted RBP18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 TTI2Q6NXR4 508 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 ZCCHC8Q6NZY4 707 aaKnown RBP18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 GUSBP11Q6P575 273 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 TRIM59Q8IWR1 403 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 GRIN3AQ8TCU5 1115 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 SMARCE1Q969G3 411 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 ATXN7L3BQ96GX2 97 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 DHTKD1Q96HY7 919 aaPredicted RBP18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 HDAC8Q9BY41 377 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 ANLNQ9NQW6 1124 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 ASNSD1Q9NWL6 643 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 FARP1Q9Y4F1 1045 aaPredicted RBP18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 HS3ST3A1Q9Y663 406 aa18.22■□□□□ 0.51
CLSTN3-214ENST00000542663 NAV2Q8IVL1 2488 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 SPTY2D1-AS1A0A0U1RR47 76 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 CASC3O15234 703 aaKnown RBP18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 RAD51BO15315 384 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 HSF2BPO75031 334 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 ZNF821O75541 412 aaPredicted RBP18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 CSF2P04141 144 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 PRNPP04156 253 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 KRT10P13645 584 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 NME1P15531 152 aaKnown RBP18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 KRT83P78385 493 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 CCDC15Q0P6D6 951 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 NME3Q13232 169 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 CDKN3Q16667 212 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 EFHC1Q5JVL4 640 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 TPRG1LQ5T0D9 272 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 KIAA1614Q5VZ46 1190 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 ISM2Q6H9L7 571 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 C22orf39Q6P5X5 142 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 LINGO4Q6UY18 593 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 KYAT3Q6YP21 454 aaKnown RBP18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 FAM183BPQ6ZVS7 135 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 DCP2Q8IU60 420 aaKnown RBP18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 ZNF683Q8IZ20 524 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 FAM174AQ8TBP5 190 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 CCDC114Q96M63 670 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 C2orf49Q9BVC5 232 aaPredicted RBP18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 SLC17A9Q9BYT1 436 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 SIK2Q9H0K1 926 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 TNKS2Q9H2K2 1166 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 UBE2TQ9NPD8 197 aaPredicted RBP18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 DYRK4Q9NR20 520 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 IL36AQ9UHA7 158 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 WASF2Q9Y6W5 498 aa18.21■□□□□ 0.51
CLSTN3-214ENST00000542663 A0A0D9SEW6 157 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 BECN2A8MW95 431 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 CDRT15L2A8MXV6 281 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 K7ENP7 123 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 LEFTY1O75610 366 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 SMC2O95347 1197 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 RHOCP08134 193 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 ARTNQ5T4W7 220 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 INO80CQ6PI98 192 aaPredicted RBP18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 OLFML1Q6UWY5 402 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 DPY19L3Q6ZPD9 716 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 EFL1Q7Z2Z2 1120 aaKnown RBP18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 PARGQ86W56 976 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 MED8Q96G25 268 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 PPP1R13BQ96KQ4 1090 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 GTPBP4Q9BZE4 634 aaKnown RBP18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 CLMPQ9H6B4 373 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 PIGVQ9NUD9 493 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 EVA1BQ9NVM1 165 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 CSNK1G3Q9Y6M4 447 aa18.2■□□□□ 0.5
CLSTN3-214ENST00000542663 CPED1A4D0V7 1026 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 EME2A4GXA9 379 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 SPINT1O43278 529 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 ADCY5O95622 1261 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 PAK4O96013 591 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 ADRB3P13945 408 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 TFE3P19532 575 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 CLCN6P51797 869 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms