RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RNF103O00237 685 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 BIN1O00499 593 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 SMAD6O43541 496 aaKnown RBP13.88□□□□□ -0.19
SS18-204ENST00000539244 OPA1O60313 960 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 ZNF821O75541 412 aaPredicted RBP13.88□□□□□ -0.19
SS18-204ENST00000539244 ADCY5O95622 1261 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 ALPPL2P10696 532 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 RRM1P23921 792 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 USP8P40818 1118 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 PTK2Q05397 1052 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 ARHGAP44Q17R89 818 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 EXOC3L4Q17RC7 722 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 ARTNQ5T4W7 220 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 C22orf39Q6P5X5 142 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 GBP6Q6ZN66 633 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 DCP2Q8IU60 420 aaKnown RBP13.88□□□□□ -0.19
SS18-204ENST00000539244 LSMEM2Q8N112 164 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 KLK6Q92876 244 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 PPP1R16AQ96I34 528 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 APOLD1Q96LR9 279 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 DEPDC7Q96QD5 511 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 MYOCQ99972 504 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 DUSP23Q9BVJ7 150 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 CALN1Q9BXU9 219 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 TKTL2Q9H0I9 626 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 FZD3Q9NPG1 666 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 IL36AQ9UHA7 158 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 STAP1Q9ULZ2 295 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 PCDHB1Q9Y5F3 818 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 U3KQA8 63 aa13.88□□□□□ -0.19
SS18-204ENST00000539244 ATMQ13315 3056 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 COL27A1Q8IZC6 1860 aaPredicted RBP13.87□□□□□ -0.19
SS18-204ENST00000539244 A0A0D9SEW6 157 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 NEMP2A6NFY4 417 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 A6NNZ2 444 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 RIOK3O14730 519 aaKnown RBP13.87□□□□□ -0.19
SS18-204ENST00000539244 SCAMP1O15126 338 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 FFAR2O15552 330 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 TFE3P19532 575 aaPredicted RBP13.87□□□□□ -0.19
SS18-204ENST00000539244 PON1P27169 355 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 CDH5P33151 784 aaPredicted RBP13.87□□□□□ -0.19
SS18-204ENST00000539244 SCNN1AP37088 669 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 LSSP48449 732 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 PCBP4P57723 403 aaKnown RBP13.87□□□□□ -0.19
SS18-204ENST00000539244 ERVPABLB-1P60509 514 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 HNRNPKP61978 463 aaKnown RBP eCLIP13.87□□□□□ -0.19
SS18-204ENST00000539244 APBA1Q02410 837 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 CCDC173Q0VFZ6 552 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 ARSIQ5FYB1 569 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 SEL1L3Q68CR1 1132 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 KIAA1161Q6NSJ0 714 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 PCSK4Q6UW60 755 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 KYAT3Q6YP21 454 aaKnown RBP13.87□□□□□ -0.19
SS18-204ENST00000539244 ZNF783Q6ZMS7 281 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 ZSCAN30Q86W11 494 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 ZNF843Q8N446 348 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 CHST14Q8NCH0 376 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 BMFQ96LC9 184 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 LGMNQ99538 433 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 CEP44Q9C0F1 390 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 EVA1BQ9NVM1 165 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.87□□□□□ -0.19
SS18-204ENST00000539244 ZNF212Q9UDV6 495 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 PAXBP1Q9Y5B6 917 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 WASF2Q9Y6W5 498 aa13.87□□□□□ -0.19
SS18-204ENST00000539244 CHD5Q8TDI0 1954 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 CXorf51AA0A1B0GTR3 108 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 ILVBLA1L0T0 632 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 K7ESM1 405 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 ERVH48-1M5A8F1 160 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 AP1G1O43747 822 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 LEFTY1O75610 366 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 ZMPSTE24O75844 475 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 PCDH8O95206 1070 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 F9P00740 461 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 CSF2P04141 144 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 NME1P15531 152 aaKnown RBP13.86□□□□□ -0.19
SS18-204ENST00000539244 ITGB7P26010 798 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 CLCN1P35523 988 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 KRT9P35527 623 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 DUSP3P51452 185 aaPredicted RBP13.86□□□□□ -0.19
SS18-204ENST00000539244 NEK3P51956 506 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 UCNP55089 124 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 CLDN2P57739 230 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 RPS21P63220 83 aaKnown RBP13.86□□□□□ -0.19
SS18-204ENST00000539244 SLC20A2Q08357 652 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 FGL2Q14314 439 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 IGF2-ASQ6U949 168 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 LRRC31Q6UY01 552 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 LINGO4Q6UY18 593 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 DPY19L3Q6ZPD9 716 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 Q6ZSR6 202 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 TMC6Q7Z403 805 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 BNIPLQ7Z465 357 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 SLC47A2Q86VL8 602 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 PCDH20Q8N6Y1 951 aaKnown RBP13.86□□□□□ -0.19
SS18-204ENST00000539244 GRIN3AQ8TCU5 1115 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 SYNCQ9H7C4 482 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 CAAP1Q9H8G2 361 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 SIX2Q9NPC8 291 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms