RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SH3GLB1Q9Y371 365 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 RABGAP1Q9Y3P9 1069 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 NEU2Q9Y3R4 380 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 RPS6KL1Q9Y6S9 549 aa6.78□□□□□ -1.32
USP28-202ENST00000535607 ZNF536O15090 1300 aa6.77□□□□□ -1.32
USP28-202ENST00000535607 BAZ2BQ9UIF8 2168 aaKnown RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 A0A0G2JND7 137 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 EIF4E1BA6NMX2 242 aaKnown RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 NFIBO00712 420 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 DNALI1O14645 258 aaPredicted RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 ADAMTS3O15072 1205 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 CBFA2T3O75081 653 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 E2F6O75461 281 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 KLHL2O95198 593 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 APOL3O95236 402 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 TNFAIP8O95379 198 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 LRG1P02750 347 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 MT-ND3P03897 115 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 PDGFRBP09619 1106 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ZCCHC18P0CG32 403 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 GOLGA8HP0CJ92 632 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 GM2AP17900 193 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 KRT4P19013 534 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ACAT1P24752 427 aaKnown RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 RPA3P35244 121 aaPredicted RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 CHKAP35790 457 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ADARP55265 1226 aaKnown RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 ARL4CP56559 192 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ACTR3P61158 418 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 PHC1P78364 1004 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ROM1Q03395 351 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 BFSP1Q12934 665 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 SLC44A4Q53GD3 710 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 PRAMEF18Q5VWM3 479 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 PRAMEF9Q5VWM5 478 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ACAD10Q6JQN1 1059 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 DRICH1Q6PGQ1 229 aaPredicted RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 BORAQ6PGQ7 559 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 TMC5Q6UXY8 1006 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 TRIM72Q6ZMU5 477 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ZNF677Q86XU0 584 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 RCOR2Q8IZ40 523 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 MYCT1Q8N699 235 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ZNF610Q8N9Z0 462 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ZBTB8BQ8NAP8 495 aaPredicted RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 TMEM174Q8WUU8 243 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 C1orf54Q8WWF1 131 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ASB15Q8WXK1 588 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 KRT35Q92764 455 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 HAS1Q92839 578 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 SKA1Q96BD8 255 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 OXNAD1Q96HP4 312 aaPredicted RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 DYDC2Q96IM9 177 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 MPP4Q96JB8 637 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 CLMNQ96JQ2 1002 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 REEP2Q9BRK0 252 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 TCHPQ9BT92 498 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 PARVGQ9HBI0 331 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 KIAA1586Q9HCI6 787 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 UBE2TQ9NPD8 197 aaPredicted RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 DLL4Q9NR61 685 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 EURLQ9NYK6 297 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 NYAP2Q9P242 653 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 MBD1Q9UIS9 605 aaPredicted RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 ZNF112Q9UJU3 913 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 BLOC1S6Q9UL45 172 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ZBTB21Q9ULJ3 1066 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 PADI4Q9UM07 663 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 COG5Q9UP83 839 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 DRG1Q9Y295 367 aaKnown RBP6.77□□□□□ -1.33
USP28-202ENST00000535607 IRAK3Q9Y616 596 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 SCINQ9Y6U3 715 aa6.77□□□□□ -1.33
USP28-202ENST00000535607 ASTN1O14525 1302 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 ASTN2O75129 1339 aaPredicted RBP6.76□□□□□ -1.33
USP28-202ENST00000535607 NFASCO94856 1347 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.76□□□□□ -1.33
USP28-202ENST00000535607 TCAF2A6NFQ2 919 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 CCDC160A6NGH7 325 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 SMIM22K7EJ46 135 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 ACOT7O00154 380 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 RFXAPO00287 272 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 FOXN3O00409 490 aaPredicted RBP6.76□□□□□ -1.33
USP28-202ENST00000535607 ZBTB5O15062 677 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 WDR46O15213 610 aaKnown RBP6.76□□□□□ -1.33
USP28-202ENST00000535607 ALOX15BO15296 676 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 CLDN3O15551 220 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 TYROBPO43914 113 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 KDM1AO60341 852 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 LPXNO60711 386 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 KATNA1O75449 491 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 FARP2O94887 1054 aaPredicted RBP6.76□□□□□ -1.33
USP28-202ENST00000535607 CLPTM1O96005 669 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 MYL4P12829 197 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 AKR1B1P15121 316 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 CREB1P16220 341 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 POU3F3P20264 500 aaPredicted RBP6.76□□□□□ -1.33
USP28-202ENST00000535607 PTX3P26022 381 aaPredicted RBP6.76□□□□□ -1.33
USP28-202ENST00000535607 AOAHP28039 575 aa6.76□□□□□ -1.33
USP28-202ENST00000535607 KCNJ1P48048 391 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms