RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 MEPCEQ7L2J0 689 aaKnown RBP3.01□□□□□ -1.93
CD44-238ENST00000534296 SYT13Q7L8C5 426 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 CTU1Q7Z7A3 348 aaKnown RBP3.01□□□□□ -1.93
CD44-238ENST00000534296 WDR5BQ86VZ2 330 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 GPSM1Q86YR5 675 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 C2CD5Q86YS7 1000 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 TMC8Q8IU68 726 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 ZDHHC23Q8IYP9 409 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 TMEM57Q8N5G2 664 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 TMEM217Q8N7C4 229 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 B4GALNT2Q8NHY0 566 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 HDAC7Q8WUI4 952 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 AFG1LQ8WV93 481 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 MIB2Q96AX9 1013 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 OTULINQ96BN8 352 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 GCC1Q96CN9 775 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 MED30Q96HR3 178 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 ACAD9Q9H845 621 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 IL36RNQ9UBH0 155 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 GTF2A1LQ9UNN4 478 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 INSL5Q9Y5Q6 135 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 DGKBQ9Y6T7 804 aa3.01□□□□□ -1.93
CD44-238ENST00000534296 A0A096LPK6 155 aa3□□□□□ -1.93
CD44-238ENST00000534296 CCDC189A1A4V9 331 aa3□□□□□ -1.93
CD44-238ENST00000534296 ACOT8O14734 319 aa3□□□□□ -1.93
CD44-238ENST00000534296 LIASO43766 372 aa3□□□□□ -1.93
CD44-238ENST00000534296 CBX6O95503 412 aa3□□□□□ -1.93
CD44-238ENST00000534296 XBP1P17861 261 aa3□□□□□ -1.93
CD44-238ENST00000534296 ARRB2P32121 409 aa3□□□□□ -1.93
CD44-238ENST00000534296 GPR12P47775 334 aa3□□□□□ -1.93
CD44-238ENST00000534296 PNLIPRP1P54315 467 aa3□□□□□ -1.93
CD44-238ENST00000534296 CDH12P55289 794 aa3□□□□□ -1.93
CD44-238ENST00000534296 TMPRSS3P57727 454 aa3□□□□□ -1.93
CD44-238ENST00000534296 ACTR2P61160 394 aa3□□□□□ -1.93
CD44-238ENST00000534296 ZBTB16Q05516 673 aa3□□□□□ -1.93
CD44-238ENST00000534296 CTXN3Q4LDR2 81 aa3□□□□□ -1.93
CD44-238ENST00000534296 KLHL22Q53GT1 634 aa3□□□□□ -1.93
CD44-238ENST00000534296 ALFQ53S48 1182 aa3□□□□□ -1.93
CD44-238ENST00000534296 FNBP1LQ5T0N5 605 aa3□□□□□ -1.93
CD44-238ENST00000534296 ASPHD1Q5U4P2 390 aa3□□□□□ -1.93
CD44-238ENST00000534296 RASGRP2Q7LDG7 609 aa3□□□□□ -1.93
CD44-238ENST00000534296 RNF144BQ7Z419 303 aa3□□□□□ -1.93
CD44-238ENST00000534296 SPATA2LQ8IUW3 424 aaPredicted RBP3□□□□□ -1.93
CD44-238ENST00000534296 GHDCQ8N2G8 530 aa3□□□□□ -1.93
CD44-238ENST00000534296 NKAPQ8N5F7 415 aaKnown RBP3□□□□□ -1.93
CD44-238ENST00000534296 SCAIQ8N9R8 606 aa3□□□□□ -1.93
CD44-238ENST00000534296 OR14A16Q8NHC5 309 aa3□□□□□ -1.93
CD44-238ENST00000534296 SH3KBP1Q96B97 665 aa3□□□□□ -1.93
CD44-238ENST00000534296 EVI5LQ96CN4 794 aa3□□□□□ -1.93
CD44-238ENST00000534296 PHF21BQ96EK2 531 aa3□□□□□ -1.93
CD44-238ENST00000534296 KTI12Q96EK9 354 aaPredicted RBP3□□□□□ -1.93
CD44-238ENST00000534296 ZNF479Q96JC4 524 aa3□□□□□ -1.93
CD44-238ENST00000534296 PYM1Q9BRP8 204 aaKnown RBP3□□□□□ -1.93
CD44-238ENST00000534296 FRMD8Q9BZ67 464 aaPredicted RBP3□□□□□ -1.93
CD44-238ENST00000534296 TM6SF1Q9BZW5 370 aa3□□□□□ -1.93
CD44-238ENST00000534296 ABHD16BQ9H3Z7 469 aa3□□□□□ -1.93
CD44-238ENST00000534296 KLHL31Q9H511 634 aa3□□□□□ -1.93
CD44-238ENST00000534296 IL21RQ9HBE5 538 aa3□□□□□ -1.93
CD44-238ENST00000534296 NOD2Q9HC29 1040 aa3□□□□□ -1.93
CD44-238ENST00000534296 SLC22A11Q9NSA0 550 aa3□□□□□ -1.93
CD44-238ENST00000534296 THAP1Q9NVV9 213 aa3□□□□□ -1.93
CD44-238ENST00000534296 GRHPRQ9UBQ7 328 aa3□□□□□ -1.93
CD44-238ENST00000534296 UPB1Q9UBR1 384 aa3□□□□□ -1.93
CD44-238ENST00000534296 SEL1LQ9UBV2 794 aa3□□□□□ -1.93
CD44-238ENST00000534296 CDH22Q9UJ99 828 aa3□□□□□ -1.93
CD44-238ENST00000534296 OSGIN2Q9Y236 505 aa3□□□□□ -1.93
CD44-238ENST00000534296 RRP7AQ9Y3A4 280 aaKnown RBP3□□□□□ -1.93
CD44-238ENST00000534296 OR6C68A6NDL8 312 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 FAM90A20PA6NIJ5 464 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 ANP32CO43423 234 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 PIP5K1CO60331 668 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 DDAH2O95865 285 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 IL1AP01583 271 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 TK1P04183 234 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 ACP5P13686 325 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 RXRAP19793 462 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 ADD2P35612 726 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 PCYT1AP49585 367 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 SELENOVP59797 346 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 ARHGAP8P85298 464 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 LTBQ06643 244 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 CRYZQ08257 329 aaKnown RBP2.99□□□□□ -1.93
CD44-238ENST00000534296 GPS2Q13227 327 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 POSTNQ15063 836 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 ANKRD1Q15327 319 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 TAF5Q15542 800 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 SLC4A8Q2Y0W8 1093 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 ODF3L2Q3SX64 289 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 ZNF585BQ52M93 769 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 DCAF6Q58WW2 860 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 UBAP2Q5T6F2 1119 aaKnown RBP2.99□□□□□ -1.93
CD44-238ENST00000534296 LCE1AQ5T7P2 110 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 CCDC70Q6NSX1 233 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 LDHAL6AQ6ZMR3 332 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 NEK10Q6ZWH5 1172 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 ZSCAN2Q7Z7L9 614 aaPredicted RBP2.99□□□□□ -1.93
CD44-238ENST00000534296 PATL1Q86TB9 770 aaKnown RBP2.99□□□□□ -1.93
CD44-238ENST00000534296 SERPINA11Q86U17 422 aa2.99□□□□□ -1.93
CD44-238ENST00000534296 FTSJ3Q8IY81 847 aaKnown RBP2.99□□□□□ -1.93
CD44-238ENST00000534296 KDM1BQ8NB78 822 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms