RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 USP17L7P0C7H9 530 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 LRPAP1P30533 357 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 GRM2Q14416 872 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 OGFRL1Q5TC84 451 aaPredicted RBP19.57■□□□□ 0.72
VPS28-213ENST00000530983 DPP9Q86TI2 863 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 ZMIZ2Q8NF64 920 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 NCSTNQ92542 709 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 COLEC11Q9BWP8 271 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 PRPF19Q9UMS4 504 aaKnown RBP19.57■□□□□ 0.72
VPS28-213ENST00000530983 ANKRD6Q9Y2G4 727 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 PIGNO95427 931 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 PYGLP06737 847 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 SLC35E2BP0CK96 405 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 SAT1P21673 171 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 GABRB3P28472 473 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 HADHAP40939 763 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 GLRBP48167 497 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 CDH17Q12864 832 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 MMEL1Q495T6 779 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 ST13P4Q8IZP2 240 aaPredicted RBP19.57■□□□□ 0.72
VPS28-213ENST00000530983 ARHGAP18Q8N392 663 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 ZFP42Q96MM3 310 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 VAT1Q99536 393 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 NUF2Q9BZD4 464 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 ABHD16BQ9H3Z7 469 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 RHOJQ9H4E5 214 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 ZNF385DQ9H6B1 395 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 ZDHHC2Q9UIJ5 367 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 TLK1Q9UKI8 766 aa19.57■□□□□ 0.72
VPS28-213ENST00000530983 CABYRO75952 493 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 JCHAINP01591 159 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 TFEBP19484 476 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 NAGLUP54802 743 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 RAB41Q5JT25 222 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 FBXL19Q6PCT2 694 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 DSELQ8IZU8 1212 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 KYQ8NBH2 561 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 TINF2Q9BSI4 451 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 KIFC1Q9BW19 673 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 OCEL1Q9H607 264 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 CNGB3Q9NQW8 809 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 OR12D3Q9UGF7 316 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 G3BP2Q9UN86 482 aaKnown RBP19.56■□□□□ 0.72
VPS28-213ENST00000530983 INPP5FQ9Y2H2 1132 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 TARM1B6A8C7 271 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 PDHXO00330 501 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 JUNP05412 331 aaKnown RBP19.56■□□□□ 0.72
VPS28-213ENST00000530983 YBX3P16989 372 aaKnown RBP eCLIP19.56■□□□□ 0.721e-7■□□□□ 9.8
VPS28-213ENST00000530983 AVPR1AP37288 418 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 THOP1P52888 689 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 USP10Q14694 798 aaKnown RBP19.56■□□□□ 0.72
VPS28-213ENST00000530983 PPP2R5DQ14738 602 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 GRAMD1BQ3KR37 738 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 ARL13BQ3SXY8 428 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 MAP3K21Q5TCX8 1036 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 NAPEPLDQ6IQ20 393 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 OTOP3Q7RTS5 596 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 BHLHA9Q7RTU4 235 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 FAM35AQ86V20 835 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 CENPLQ8N0S6 344 aaPredicted RBP19.56■□□□□ 0.72
VPS28-213ENST00000530983 CPSF7Q8N684 471 aaKnown RBP19.56■□□□□ 0.72
VPS28-213ENST00000530983 CNTD1Q8N815 330 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 RP9Q8TA86 221 aaKnown RBP19.56■□□□□ 0.72
VPS28-213ENST00000530983 ZC3H15Q8WU90 426 aaKnown RBP19.56■□□□□ 0.72
VPS28-213ENST00000530983 STYXQ8WUJ0 223 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 KCTD4Q8WVF5 259 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 CELF6Q96J87 481 aaKnown RBP19.56■□□□□ 0.72
VPS28-213ENST00000530983 NDNQ99608 321 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 PSMD13Q9UNM6 376 aa19.56■□□□□ 0.72
VPS28-213ENST00000530983 MYLKQ15746 1914 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 DYNC1LI2O43237 492 aaPredicted RBP19.55■□□□□ 0.72
VPS28-213ENST00000530983 LRIG2O94898 1065 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 PPARGP37231 505 aaPredicted RBP19.55■□□□□ 0.72
VPS28-213ENST00000530983 GRIA2P42262 883 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 ALDH1A3P47895 512 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 ADAM17P78536 824 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 NSUN2Q08J23 767 aaKnown RBP eCLIP19.55■□□□□ 0.72
VPS28-213ENST00000530983 ARMC3Q5W041 872 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 TMEM198Q66K66 360 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 IQSEC1Q6DN90 963 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 C16orf89Q6UX73 402 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 TMC7Q7Z402 723 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 GPR142Q7Z601 462 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 LSMEM2Q8N112 164 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 PQLC1Q8N2U9 271 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 FSTL5Q8N475 847 aaPredicted RBP19.55■□□□□ 0.72
VPS28-213ENST00000530983 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.55■□□□□ 0.72
VPS28-213ENST00000530983 EDEM1Q92611 657 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 PCED1BQ96HM7 432 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 BTBD9Q96Q07 612 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 PPP1R10Q96QC0 940 aaKnown RBP19.55■□□□□ 0.72
VPS28-213ENST00000530983 CENPKQ9BS16 269 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 TKTL2Q9H0I9 626 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 RNF181Q9P0P0 153 aa19.55■□□□□ 0.72
VPS28-213ENST00000530983 MYBPHLA2RUH7 354 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 CAPN8A6NHC0 703 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 AHSGP02765 367 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 HK2P52789 917 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 RPL26P61254 145 aaKnown RBP19.54■□□□□ 0.72
VPS28-213ENST00000530983 PRKAA1Q13131 559 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms