RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TMEM240Q5SV17 173 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 COL13A1Q5TAT6 717 aaPredicted RBP21.05■□□□□ 0.96
VPS28-209ENST00000528142 HHATQ5VTY9 493 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 KDELC1Q6UW63 502 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 RANBP10Q6VN20 620 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 CCDC117Q8IWD4 279 aaPredicted RBP21.05■□□□□ 0.96
VPS28-209ENST00000528142 CACNA2D3Q8IZS8 1091 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 FIBCD1Q8N539 461 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 PRICKLE1Q96MT3 831 aaPredicted RBP21.05■□□□□ 0.96
VPS28-209ENST00000528142 C12orf65Q9H3J6 166 aaKnown RBP21.05■□□□□ 0.96
VPS28-209ENST00000528142 ZNF334Q9HCZ1 680 aaPredicted RBP21.05■□□□□ 0.96
VPS28-209ENST00000528142 ENTPD7Q9NQZ7 604 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 IL1RAPL1Q9NZN1 696 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 PSAT1Q9Y617 370 aa21.05■□□□□ 0.96
VPS28-209ENST00000528142 ZFP37Q9Y6Q3 630 aaPredicted RBP21.05■□□□□ 0.96
VPS28-209ENST00000528142 CNPP09543 421 aaKnown RBP21.04■□□□□ 0.96
VPS28-209ENST00000528142 DHRS4L1P0CG22 281 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 ETV4P43268 484 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 MPP3Q13368 585 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 MROH9Q5TGP6 573 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 CLP1Q92989 425 aaKnown RBP21.04■□□□□ 0.96
VPS28-209ENST00000528142 WBP2Q969T9 261 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 PABPC5Q96DU9 382 aaKnown RBP21.04■□□□□ 0.96
VPS28-209ENST00000528142 ELAC2Q9BQ52 826 aaKnown RBP21.04■□□□□ 0.96
VPS28-209ENST00000528142 IL21Q9HBE4 155 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 NT5MQ9NPB1 228 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 MKS1Q9NXB0 559 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 PRAMEF11O60813 436 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 PMPCBO75439 489 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 CDH4P55283 916 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 DNAJC3Q13217 504 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 PPIGQ13427 754 aaKnown RBP eCLIP21.04■□□□□ 0.966e-8■□□□□ 10.8
VPS28-209ENST00000528142 RASSF3Q86WH2 238 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 TADA1Q96BN2 335 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 PDFQ9HBH1 243 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 ZFATQ9P243 1243 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 AGO1Q9UL18 857 aaKnown RBP21.04■□□□□ 0.96
VPS28-209ENST00000528142 SSX2IPQ9Y2D8 614 aa21.04■□□□□ 0.96
VPS28-209ENST00000528142 SNX3O60493 162 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 MMP2P08253 660 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 SPATA31D3P0C874 917 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 NMBRP28336 390 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 WNT3AP56704 352 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 RPS24P62847 133 aaKnown RBP21.03■□□□□ 0.96
VPS28-209ENST00000528142 IHHQ14623 411 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 PCID2Q5JVF3 399 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 RABGAP1LQ5R372 815 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 CDHR3Q6ZTQ4 885 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 SPATA31D4Q6ZUB0 917 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 MICALCLQ6ZW33 695 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 ZNF354CQ86Y25 554 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 PGBD5Q8N414 524 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 OR52K2Q8NGK3 314 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 NSMCE1Q8WV22 266 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 ZFRQ96KR1 1074 aaKnown RBP21.03■□□□□ 0.96
VPS28-209ENST00000528142 MAGEH1Q9H213 219 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 PRKAG2Q9UGJ0 569 aa21.03■□□□□ 0.96
VPS28-209ENST00000528142 TGM5O43548 720 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 ALADP13716 330 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 MAXP61244 160 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 ADGRF1Q5T601 910 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 PKN3Q6P5Z2 889 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 LILRA6Q6PI73 481 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 ITIH5Q86UX2 942 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 KLHL23Q8NBE8 558 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 CCDC197Q8NCU1 140 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 ARRDC2Q8TBH0 407 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 ZNF778Q96MU6 729 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 SRPK1Q96SB4 655 aaKnown RBP21.02■□□□□ 0.96
VPS28-209ENST00000528142 CPNE1Q99829 537 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 KIAA1671Q9BY89 1806 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 VPS11Q9H270 941 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 ARNT2Q9HBZ2 717 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 ATP13A1Q9HD20 1204 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 VPS45Q9NRW7 570 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 STOML2Q9UJZ1 356 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 INSL6Q9Y581 213 aa21.02■□□□□ 0.96
VPS28-209ENST00000528142 A0A0D9SEW6 157 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 COPEO14579 308 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 OLFM2O95897 454 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 HOXD9P28356 352 aaPredicted RBP21.01■□□□□ 0.95
VPS28-209ENST00000528142 GP5P40197 560 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 SGSHP51688 502 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 DSC2Q02487 901 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 GNA12Q03113 381 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 LBRQ14739 615 aaKnown RBP21.01■□□□□ 0.95
VPS28-209ENST00000528142 SEPT7Q16181 437 aaKnown RBP21.01■□□□□ 0.95
VPS28-209ENST00000528142 TEDDM1Q5T9Z0 273 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 POTEHQ6S545 545 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 CNPY4Q8N129 248 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 SPOCK2Q92563 424 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 FSD1LQ9BXM9 530 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 ATXN2Q99700 1313 aaKnown RBP21.01■□□□□ 0.95
VPS28-209ENST00000528142 CLDN11O75508 207 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 ZKSCAN8Q15776 578 aaPredicted RBP21.01■□□□□ 0.95
VPS28-209ENST00000528142 SMAD1Q15797 465 aaKnown RBP21.01■□□□□ 0.95
VPS28-209ENST00000528142 PABPC1LQ4VXU2 614 aaKnown RBP21.01■□□□□ 0.95
VPS28-209ENST00000528142 GRTP1Q5TC63 336 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 TMCO4Q5TGY1 634 aa21.01■□□□□ 0.95
VPS28-209ENST00000528142 CGB2Q6NT52 195 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms