RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 HDAC3O15379 428 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 KLHL41O60662 606 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 KRT34O76011 436 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 DDHD2O94830 711 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 F7P08709 466 aaPredicted RBP21.56■■□□□ 1.04
VPS28-205ENST00000526204 ITGAXP20702 1163 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 RPL14P50914 215 aaKnown RBP21.56■■□□□ 1.04
VPS28-205ENST00000526204 EIF4EBP2Q13542 120 aaPredicted RBP21.56■■□□□ 1.04
VPS28-205ENST00000526204 MAPRE1Q15691 268 aaKnown RBP21.56■■□□□ 1.04
VPS28-205ENST00000526204 POTEHQ6S545 545 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 FRMD7Q6ZUT3 714 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 DEFB107AQ8IZN7 70 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 TMEM151AQ8N4L1 468 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 UCMAQ8WVF2 138 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 IL12RB2Q99665 862 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 SENP6Q9GZR1 1112 aaPredicted RBP21.56■■□□□ 1.04
VPS28-205ENST00000526204 GLOD4Q9HC38 313 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 NEU3Q9UQ49 428 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 MAGEA13PA6NCF6 341 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 MATN3O15232 486 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 ZBTB14O43829 449 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 THRAP10827 490 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 AKR1A1P14550 325 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 HOXC13P31276 330 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 EPHB1P54762 984 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 GEMP55040 296 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 CUL3Q13618 768 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 SEL1L3Q68CR1 1132 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 FBXW8Q8N3Y1 598 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 PPHLN1Q8NEY8 458 aaKnown RBP21.56■■□□□ 1.04
VPS28-205ENST00000526204 USP33Q8TEY7 942 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 STYXQ8WUJ0 223 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 CNDP1Q96KN2 507 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 ECSITQ9BQ95 431 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 PAAF1Q9BRP4 392 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 MTG1Q9BT17 334 aaPredicted RBP21.56■■□□□ 1.04
VPS28-205ENST00000526204 SIK2Q9H0K1 926 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 VCX3BQ9H321 246 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 MAN1C1Q9NR34 630 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 VTI1BQ9UEU0 232 aa21.56■■□□□ 1.04
VPS28-205ENST00000526204 COL4A4P53420 1690 aaPredicted RBP21.55■■□□□ 1.04
VPS28-205ENST00000526204 SLC22A2O15244 555 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 IRAK2O43187 625 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 NEBLO76041 1014 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 B3GAT3O94766 335 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 AHSGP02765 367 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 RPLP2P05387 115 aaKnown RBP21.55■■□□□ 1.04
VPS28-205ENST00000526204 SLC35E2BP0CK96 405 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 GRIA4P48058 902 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 ASPHQ12797 758 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 PRKAA1Q13131 559 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 IZUMO2Q6UXV1 221 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 ARHGAP12Q8IWW6 846 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 SPATA22Q8NHS9 363 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 MAPK15Q8TD08 544 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 UBE2OQ9C0C9 1292 aaKnown RBP21.55■■□□□ 1.04
VPS28-205ENST00000526204 CYP4F11Q9HBI6 524 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 MRM3Q9HC36 420 aaKnown RBP21.55■■□□□ 1.04
VPS28-205ENST00000526204 ENTPD7Q9NQZ7 604 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 ABCC13Q9NSE7 274 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 RUVBL2Q9Y230 463 aaKnown RBP21.55■■□□□ 1.04
VPS28-205ENST00000526204 ACOT9Q9Y305 439 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 TK2O00142 265 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 MAFKO60675 156 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 DUSP11O75319 330 aaKnown RBP21.55■■□□□ 1.04
VPS28-205ENST00000526204 CHRNA1P02708 482 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 CCR1P32246 355 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 TBL3Q12788 808 aaKnown RBP21.55■■□□□ 1.04
VPS28-205ENST00000526204 DHDDSQ86SQ9 333 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 GATA6Q92908 595 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 SCYL1Q96KG9 808 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 PKMYT1Q99640 499 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 SHCBP1LQ9BZQ2 653 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 DLGAP2Q9P1A6 1054 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 SSX2IPQ9Y2D8 614 aa21.55■■□□□ 1.04
VPS28-205ENST00000526204 ZNF623O75123 536 aa21.54■■□□□ 1.04
VPS28-205ENST00000526204 SAT1P21673 171 aa21.54■■□□□ 1.04
VPS28-205ENST00000526204 ADSLP30566 484 aaPredicted RBP21.54■■□□□ 1.04
VPS28-205ENST00000526204 RAB27AP51159 221 aa21.54■■□□□ 1.04
VPS28-205ENST00000526204 PPP2R5DQ14738 602 aa21.54■■□□□ 1.04
VPS28-205ENST00000526204 TIGD7Q6NT04 549 aaPredicted RBP21.54■■□□□ 1.04
VPS28-205ENST00000526204 LRRC49Q8IUZ0 686 aa21.54■■□□□ 1.04
VPS28-205ENST00000526204 IPMKQ8NFU5 416 aa21.54■■□□□ 1.04
VPS28-205ENST00000526204 SLC26A7Q8TE54 656 aa21.54■■□□□ 1.04
VPS28-205ENST00000526204 OR52B2Q96RD2 323 aa21.54■■□□□ 1.04
VPS28-205ENST00000526204 POMPQ9Y244 141 aa21.54■■□□□ 1.04
VPS28-205ENST00000526204 PHGDHO43175 533 aaKnown RBP21.53■■□□□ 1.04
VPS28-205ENST00000526204 PDE5AO76074 875 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 VAPBO95292 243 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 IGHA2P01877 340 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 CHRNGP07510 517 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 CTSHP09668 335 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 SBK3P0C264 359 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 PAMP19021 973 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 TFEBP19484 476 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 SP100P23497 879 aaPredicted RBP21.53■■□□□ 1.04
VPS28-205ENST00000526204 GABRB3P28472 473 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 ERFP50548 548 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 RAB10P61026 200 aa21.53■■□□□ 1.04
VPS28-205ENST00000526204 CCNIQ14094 377 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms