RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 VPS28Q9UK41 221 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 TTLL3Q9Y4R7 772 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 MAD1L1Q9Y6D9 718 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 TEX264Q9Y6I9 313 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 ZNF638Q14966 1978 aaKnown RBP16.27■□□□□ 0.2
NUP54-214ENST00000514307 A0A1W2PPC1 479 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 CBX4O00257 560 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 RASGRF2O14827 1237 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 ELK3P41970 407 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 SGSHP51688 502 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 CDH17Q12864 832 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 DMC1Q14565 340 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 ZNF77Q15935 545 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 SYCP2LQ5T4T6 812 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 KCTD11Q693B1 232 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 CXorf57Q6NSI4 855 aaKnown RBP16.27■□□□□ 0.2
NUP54-214ENST00000514307 TPGS1Q6ZTW0 290 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 CYS1Q717R9 158 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 ING5Q8WYH8 240 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 IMP4Q96G21 291 aaKnown RBP16.27■□□□□ 0.2
NUP54-214ENST00000514307 RIPOR3Q96MK2 946 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 PSKH2Q96QS6 385 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 SH3GL2Q99962 352 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 CINPQ9BW66 212 aaPredicted RBP16.27■□□□□ 0.2
NUP54-214ENST00000514307 PRO3102Q9H379 93 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 LRRC4CQ9HCJ2 640 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 CASS4Q9NQ75 786 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 SPHK2Q9NRA0 654 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 SAMD15Q9P1V8 674 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 ZC3H7BQ9UGR2 993 aaKnown RBP16.27■□□□□ 0.2
NUP54-214ENST00000514307 CCL26Q9Y258 94 aa16.27■□□□□ 0.2
NUP54-214ENST00000514307 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.27■□□□□ 0.2
NUP54-214ENST00000514307 TMEM265A0A087WTH1 108 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 TLDC2A0PJX2 215 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 HMGB1P1B2RPK0 211 aaPredicted RBP16.26■□□□□ 0.19
NUP54-214ENST00000514307 AVILO75366 819 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 HLA-DQB2P05538 268 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 ATP5DP30049 168 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 MAGEA3P43357 314 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 GAD2Q05329 585 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 ZNF844Q08AG5 666 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 NSUN2Q08J23 767 aaKnown RBP eCLIP16.26■□□□□ 0.19
NUP54-214ENST00000514307 SLC14A2Q15849 920 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 KLHL38Q2WGJ6 581 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 LRIT3Q3SXY7 679 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 KRT71Q3SY84 523 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 MSS51Q4VC12 460 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 RALGPS1Q5JS13 557 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 HP1BP3Q5SSJ5 553 aaPredicted RBP16.26■□□□□ 0.19
NUP54-214ENST00000514307 STAMBPL1Q96FJ0 436 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 SIGLEC10Q96LC7 697 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 EPB41L4BQ9H329 900 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 TRPV4Q9HBA0 871 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 PDFQ9HBH1 243 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 TMBIM4Q9HC24 238 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 DUS2Q9NX74 493 aaKnown RBP16.26■□□□□ 0.19
NUP54-214ENST00000514307 FETUBQ9UGM5 382 aa16.26■□□□□ 0.19
NUP54-214ENST00000514307 F5H423 210 aaPredicted RBP16.25■□□□□ 0.19
NUP54-214ENST00000514307 NRG2O14511 850 aaPredicted RBP16.25■□□□□ 0.19
NUP54-214ENST00000514307 SCAMP3O14828 347 aaKnown RBP16.25■□□□□ 0.19
NUP54-214ENST00000514307 SYF2O95926 243 aaKnown RBP16.25■□□□□ 0.19
NUP54-214ENST00000514307 EPOP01588 193 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 POLBP06746 335 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 HOXD9P28356 352 aaPredicted RBP16.25■□□□□ 0.19
NUP54-214ENST00000514307 STX2P32856 288 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 MTHFRP42898 656 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 SESN2P58004 480 aaPredicted RBP16.25■□□□□ 0.19
NUP54-214ENST00000514307 SULT2A1Q06520 285 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 USP4Q13107 963 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 NR1H3Q13133 447 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 LAMB3Q13751 1172 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 FSCBQ5H9T9 825 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 AGBL2Q5U5Z8 902 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 RNF43Q68DV7 783 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 CASC4Q6P4E1 433 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 TMEM25Q86YD3 366 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 DCAF4L2Q8NA75 395 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 UHMK1Q8TAS1 419 aaKnown RBP16.25■□□□□ 0.19
NUP54-214ENST00000514307 BPIFB1Q8TDL5 484 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 FGF13Q92913 245 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 PGM2Q96G03 612 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 CYTH2Q99418 400 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 TBL1YQ9BQ87 522 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 MLPHQ9BV36 600 aaPredicted RBP16.25■□□□□ 0.19
NUP54-214ENST00000514307 BBS2Q9BXC9 721 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 FSD1LQ9BXM9 530 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 IL22Q9GZX6 179 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 LINC00597Q9H2U6 94 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 CENPHQ9H3R5 247 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 BCCIPQ9P287 314 aaKnown RBP eCLIP16.25■□□□□ 0.19
NUP54-214ENST00000514307 CDH7Q9ULB5 785 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 ARIH1Q9Y4X5 557 aaPredicted RBP16.25■□□□□ 0.19
NUP54-214ENST00000514307 OR51B4Q9Y5P0 310 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 SZT2Q5T011 3432 aa16.25■□□□□ 0.19
NUP54-214ENST00000514307 SOX1O00570 391 aaPredicted RBP16.24■□□□□ 0.19
NUP54-214ENST00000514307 RGS16O15492 202 aaPredicted RBP16.24■□□□□ 0.19
NUP54-214ENST00000514307 PMPCBO75439 489 aa16.24■□□□□ 0.19
NUP54-214ENST00000514307 ADH1CP00326 375 aa16.24■□□□□ 0.19
NUP54-214ENST00000514307 PENKP01210 267 aaPredicted RBP16.24■□□□□ 0.19
NUP54-214ENST00000514307 SERPINF2P08697 491 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms