RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 MAPK13O15264 365 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 GDF9O60383 454 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 PAGE1O75459 146 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 MZF1P28698 734 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 EPHB2P29323 1055 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 SLC6A4P31645 630 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 GAD2Q05329 585 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 PDGFRLQ15198 375 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 C21orf62-AS1Q17RA5 79 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 FSTL4Q6MZW2 842 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 TMEM154Q6P9G4 183 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 KDM7AQ6ZMT4 941 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 CLEC17AQ6ZS10 378 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 ADAT2Q7Z6V5 191 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 MMAAQ8IVH4 418 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 RAVER1Q8IY67 606 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 RNF31Q96EP0 1072 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 FCRL2Q96LA5 508 aaPredicted RBP8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 CCDC42Q96M95 316 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 CEP41Q9BYV8 373 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 VCXQ9H320 206 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 VRTNQ9H8Y1 702 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 NOP53Q9NZM5 478 aaKnown RBP8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 ARHGAP26Q9UNA1 814 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 CNTRLQ7Z7A1 2325 aa8.07□□□□□ -1.12
LIMCH1-219ENST00000514096 SLC9A3R1O14745 358 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 DNAJC8O75937 253 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 PRKCGP05129 697 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 PAEPP09466 180 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 OR1E1P30953 314 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ARL1P40616 181 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 SERPINB4P48594 390 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ATXN3P54252 364 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 FMO1Q01740 532 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 SF3A2Q15428 464 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ATP13A4Q4VNC1 1196 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ZNF571Q7Z3V5 609 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 APCDD1Q8J025 514 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 MSANTD4Q8NCY6 345 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 GSDMBQ8TAX9 411 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 P2RY11Q96G91 374 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 OXCT2Q9BYC2 517 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 NSRP1Q9H0G5 558 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ATAD3AQ9NVI7 634 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 SEPT10Q9P0V9 454 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 SATB2Q9UPW6 733 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 TDRKHQ9Y2W6 561 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 NUP205Q92621 2012 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 DCDC2BA2VCK2 349 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 DPPA5A6NC42 116 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 TMEM247A6NEH6 219 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ANHXE9PGG2 379 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 FSBPO95073 299 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 TUBP50607 506 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 COL19A1Q14993 1142 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 SMAD1Q15797 465 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 STK11Q15831 433 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 SYCP2LQ5T4T6 812 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 TMEM92Q6UXU6 159 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 SAMD14Q8IZD0 417 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 HDAC2Q92769 488 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 NACC2Q96BF6 587 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ERP27Q96DN0 273 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ARRDC1-AS1Q9H2J1 176 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ANAPC7Q9UJX3 599 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 STAP1Q9ULZ2 295 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 A0A087X0T9 212 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 A0A0D9SEW6 157 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 RNASEH2AO75792 299 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 MT-CO1P00395 513 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 FAM228BP0C875 321 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 HNRNPLP14866 589 aaKnown RBP eCLIP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 POLR2EP19388 210 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 HPDP32754 393 aaPredicted RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 PTGER3P43115 390 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 MTTPP55157 894 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 SLC6A3Q01959 620 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 NHLH1Q02575 133 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 RPL6Q02878 288 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 STARD3Q14849 445 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 CYTH1Q15438 398 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ALFQ53S48 1182 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ASCL5Q7RTU5 278 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 DAAM2Q86T65 1068 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 VPS36Q86VN1 386 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 CCDC105Q8IYK2 499 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 FAM71AQ8IYT1 594 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 CENPTQ96BT3 561 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 NUP85Q9BW27 656 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 GANQ9H2C0 597 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 NOD2Q9HC29 1040 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 LUC7LQ9NQ29 371 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ZMAT5Q9UDW3 170 aaKnown RBP8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 SIK3Q9Y2K2 1263 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 COMMD10Q9Y6G5 202 aa8.06□□□□□ -1.12
LIMCH1-219ENST00000514096 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 MAN2B1O00754 1011 aa8.05□□□□□ -1.12
LIMCH1-219ENST00000514096 CBFA2T2O43439 604 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms