RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 CCDC134Q9H6E4 229 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 DNAJC11Q9NVH1 559 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SHOC2Q9UQ13 582 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ASF1AQ9Y294 204 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 PCDHGB3Q9Y5G1 929 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SNX8Q9Y5X2 465 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 KCNE2Q9Y6J6 123 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 TMEM131LA2VDJ0 1609 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 C15orf38-AP3S2A0A0A6YYH1 394 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 C1orf232A0A0U1RR37 186 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 E9PBE3 544 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SEC31AO94979 1220 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 RB1P06400 928 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ARF4P18085 180 aaPredicted RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 VSNL1P62760 191 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 GALNTL6Q49A17 601 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SEL1L3Q68CR1 1132 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 KCNT2Q6UVM3 1135 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 CHSY3Q70JA7 882 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SH3BP5LQ7L8J4 393 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ARPINQ7Z6K5 226 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 C11orf74Q86VG3 221 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 RAVER1Q8IY67 606 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 TMEM161BQ8NDZ6 487 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 STAG3L4Q8TBR4 150 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 BRSK1Q8TDC3 778 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 FAXDC2Q96IV6 333 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SEMA6BQ9H3T3 888 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SLC32A1Q9H598 525 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 MANSC1Q9H8J5 431 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 TMEM216Q9P0N5 145 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 PRKAG3Q9UGI9 489 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 MFHAS1Q9Y4C4 1052 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 NFKBIEO00221 500 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ARHGEF9O43307 516 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 B4GALT4O60513 344 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 UMPSP11172 480 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 CDH4P55283 916 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 LRRC38Q5VT99 294 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 R3HCC1LQ7Z5L2 792 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 RABEPKQ7Z6M1 372 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ECHDC2Q86YB7 292 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SYT12Q8IV01 421 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ADGRG2Q8IZP9 1017 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 METTL6Q8TCB7 284 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 PXYLP1Q8TE99 480 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ANKRD49Q8WVL7 239 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ARHGAP39Q9C0H5 1083 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 EPN3Q9H201 632 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 TLR9Q9NR96 1032 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ADPRHL2Q9NX46 363 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 NOP53Q9NZM5 478 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 HES2Q9Y543 173 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 COPG1Q9Y678 874 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 SLIT3O75094 1523 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SMIM28A0A1B0GU29 152 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 YDJCA8MPS7 323 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SLC28A1O00337 649 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 TRDMT1O14717 391 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 HOXC12P31275 282 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 FMO4P31512 558 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 CCR4P51679 360 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 CASP6P55212 293 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 MRPS22P82650 360 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 MAPK7Q13164 816 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 TCEAL5Q5H9L2 206 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ATXN7L2Q5T6C5 722 aaPredicted RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 TMEM132CQ8N3T6 1108 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ADAM32Q8TC27 787 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 DEPDC7Q96QD5 511 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 AIF1LQ9BQI0 150 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SLITRK2Q9H156 845 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 CRTAC1Q9NQ79 661 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 RABGEF1Q9UJ41 708 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 NUDT5Q9UKK9 219 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 PCDHB1Q9Y5F3 818 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 BTN3A1O00481 513 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 MEIS2O14770 477 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ENO1P06733 434 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 FOSL2P15408 326 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 PCSK2P16519 638 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 RHOQP17081 205 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ADRA1DP25100 572 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 MIPP30301 263 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 CDK7P50613 346 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ZNF143P52747 638 aaPredicted RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 PNLIPRP1P54315 467 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 AP1S1P61966 158 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SLC9A5Q14940 896 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 CAPRIN2Q6IMN6 1127 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 PPP1R36Q96LQ0 422 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 RAB11FIP5Q9BXF6 653 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 CEP44Q9C0F1 390 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 IL23AQ9NPF7 189 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 GTF2IRD1Q9UHL9 959 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 PCDHB3Q9Y5E6 796 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 PXDNQ92626 1479 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 A0A0B4J269 797 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SLC38A8A6NNN8 435 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SOCS7O14512 581 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms