RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 DSG4Q86SJ6 1040 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 CACNA2D3Q8IZS8 1091 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 C10orf88Q9H8K7 445 aa8.51□□□□□ -1.05
USP54-215ENST00000497106 ALG13Q9NP73 1137 aaKnown RBP8.51□□□□□ -1.05
USP54-215ENST00000497106 TRIP12Q14669 1992 aaPredicted RBP8.51□□□□□ -1.05
USP54-215ENST00000497106 FAM237BA0A1B0GVD1 139 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 GIPC1O14908 333 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 GLRA3O75311 464 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 MPOP05164 745 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 POU2F2P09086 479 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 CYP2A6P11509 494 aaPredicted RBP8.5□□□□□ -1.05
USP54-215ENST00000497106 GDF10P55107 478 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 BCL2L1Q07817 233 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 ARHGEF7Q14155 803 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 C16orf59Q7L2K0 433 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 CCDC33Q8N5R6 958 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 ACMSDQ8TDX5 336 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 EPS8L3Q8TE67 593 aaKnown RBP8.5□□□□□ -1.05
USP54-215ENST00000497106 GPR63Q9BZJ6 419 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 NEUROG2Q9H2A3 272 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 ATP13A3Q9H7F0 1226 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 USP29Q9HBJ7 922 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 KLHL14Q9P2G3 628 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 LGALS13Q9UHV8 139 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 ARHGAP26Q9UNA1 814 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 KDELR3O43731 214 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 ALADP13716 330 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 MAGEA6P43360 314 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 SCNN1BP51168 640 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 PITX1P78337 314 aaPredicted RBP8.5□□□□□ -1.05
USP54-215ENST00000497106 CYP4F8P98187 520 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 CDK18Q07002 472 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 RNF187Q5TA31 235 aaPredicted RBP8.5□□□□□ -1.05
USP54-215ENST00000497106 CPXM2Q8N436 756 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 FEM1CQ96JP0 617 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 MTMR10Q9NXD2 777 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 DCDC2Q9UHG0 476 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 ZNF180Q9UJW8 692 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 GRID1Q9ULK0 1009 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 TBC1D30Q9Y2I9 924 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 GOLGA8QA0A0J9YX86 632 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 GOLGA8OA6NCC3 632 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 GOLGA8NF8WBI6 632 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 SUN1O94901 812 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 TBX18O95935 607 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 PYGLP06737 847 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 PDGFRLQ15198 375 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 PIK3R6Q5UE93 754 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 ZDHHC20Q5W0Z9 365 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 UGT3A1Q6NUS8 523 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 KCNMB4Q86W47 210 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 DCAF4L2Q8NA75 395 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 SH3RF2Q8TEC5 729 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 ARNTL2Q8WYA1 636 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 BBS2Q9BXC9 721 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 KLF16Q9BXK1 252 aaPredicted RBP8.5□□□□□ -1.05
USP54-215ENST00000497106 PLA2G4CQ9UP65 541 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 ANKRD6Q9Y2G4 727 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 MYH10P35580 1976 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 A0A1W2PRU2 124 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 LINC01553A4QN01 128 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 C2orf71A6NGG8 1288 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 H0YHG0 523 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 PRAMEF11O60813 436 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 H2AFYO75367 372 aaKnown RBP8.5□□□□□ -1.05
USP54-215ENST00000497106 STC2O76061 302 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 USP1O94782 785 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 SEC24AO95486 1093 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 FYNP06241 537 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 CD86P42081 329 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 SEMA3BQ13214 749 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 KIAA1958Q8N8K9 716 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 SEMA3CQ99985 751 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 SLC2A11Q9BYW1 496 aa8.5□□□□□ -1.05
USP54-215ENST00000497106 MRM3Q9HC36 420 aaKnown RBP8.5□□□□□ -1.05
USP54-215ENST00000497106 TTC36A6NLP5 189 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 FSHRP23945 695 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 WNT3AP56704 352 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 SKOR1P84550 965 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 SERINC3Q13530 473 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 MPP7Q5T2T1 576 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 RHBDF2Q6PJF5 856 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 TBC1D1Q86TI0 1168 aaPredicted RBP8.49□□□□□ -1.05
USP54-215ENST00000497106 TTC9BQ8N6N2 239 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 OR52K1Q8NGK4 314 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 SP7Q8TDD2 431 aaPredicted RBP8.49□□□□□ -1.05
USP54-215ENST00000497106 SSU72Q9NP77 194 aaKnown RBP8.49□□□□□ -1.05
USP54-215ENST00000497106 TDP1Q9NUW8 608 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 SNX10Q9Y5X0 201 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 TRIM49D1C9J1S8 452 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 B4GALT3O60512 393 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 NDUFS3O75489 264 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 NDST3O95803 873 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 IL4RP24394 825 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 KCNQ1P51787 676 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 ZBTB16Q05516 673 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 SYCP2LQ5T4T6 812 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 BCAS4Q8TDM0 211 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 CERS2Q96G23 380 aa8.49□□□□□ -1.05
USP54-215ENST00000497106 CEP41Q9BYV8 373 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms