RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MINDY3Q9H8M7 445 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 TLR8Q9NR97 1041 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 GIMAP4Q9NUV9 329 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 ZNF180Q9UJW8 692 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 SLCO1B7G3V0H7 640 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 TPP1O14773 563 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 ABL2P42684 1182 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 RENBPP51606 427 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 GBE1Q04446 702 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 CDCA2Q69YH5 1023 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 SZRD1Q7Z422 152 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 MARK4Q96L34 752 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 SERPINB11Q96P15 392 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 ZNF670Q9BS34 389 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 PNPOQ9NVS9 261 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 UTP6Q9NYH9 597 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 VPS28Q9UK41 221 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 GNEQ9Y223 722 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 TDRKHQ9Y2W6 561 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 HACD1B0YJ81 288 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 CDKN2BP42772 138 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 ACTR3P61158 418 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 PRKAA1Q13131 559 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 RALGPS1Q5JS13 557 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 FAM182AQ5T1J6 154 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 ARCQ7LC44 396 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 PHF21BQ96EK2 531 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 HBS1LQ9Y450 684 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 PKD1L3Q7Z443 1732 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 PHGDHO43175 533 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 RHOCP08134 193 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 PERM1Q5SV97 790 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 NOL9Q5SY16 702 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 C6orf52Q5T4I8 152 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 MYLPFQ96A32 169 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 FZD8Q9H461 694 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 POLR1BQ9H9Y6 1135 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 PPM1HQ9ULR3 514 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 SMIM35A0A1B0GVV1 85 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 C2orf81A6NN90 581 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 UBDO15205 165 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 C22orf31O95567 290 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 NR1D2Q14995 579 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 ZNF618Q5T7W0 954 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 TDRPQ86YL5 185 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 ABHD8Q96I13 439 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 CDH22Q9UJ99 828 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 ITGB1BP2Q9UKP3 347 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 TRHDEQ9UKU6 1024 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 H2AFYO75367 372 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 PIGNO95427 931 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 HIST1H2AGP0C0S8 130 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 HIST1H2ADP20671 130 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 MRPS5P82675 430 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 GPR107Q5VW38 600 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 TMC5Q6UXY8 1006 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 HIST1H2AHQ96KK5 128 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 HIST1H2AJQ99878 128 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 H2AFJQ9BTM1 129 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 NCKIPSDQ9NZQ3 722 aa16.52■□□□□ 0.24
CCDC88B-209ENST00000494080 NR5A2O00482 541 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 PRKAR2AP13861 404 aaKnown RBP16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 ADGRD1Q6QNK2 874 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 TTC30BQ8N4P2 665 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 RCN3Q96D15 328 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 LRRC39Q96DD0 335 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 NOL6Q9H6R4 1146 aaKnown RBP16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 CRLS1Q9UJA2 301 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 TCEA3O75764 348 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 LRG1P02750 347 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 DEFA1P59665 94 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 DEFA3P59666 94 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 PLIN5Q00G26 463 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 TRIM60Q495X7 471 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 ENDOVQ8N8Q3 282 aaKnown RBP16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 FBXL18Q96ME1 805 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 SEPHS2Q99611 448 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 SLC4A5Q9BY07 1137 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 CASS4Q9NQ75 786 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 COPG2Q9UBF2 871 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 CROTQ9UKG9 612 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 PLLPQ9Y342 182 aa16.52■□□□□ 0.23
CCDC88B-209ENST00000494080 INPP4BO15327 924 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 HOXA2O43364 376 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 BPGMP07738 259 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 HOXC6P09630 235 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 CDH3P22223 829 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 PLK1P53350 603 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 KCNK10P57789 538 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 INHBEP58166 350 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 PEX6Q13608 980 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 CCDC153Q494R4 210 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 FAM35AQ86V20 835 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 DHRSXQ8N5I4 330 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 TUBGCP3Q96CW5 907 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 PHF12Q96QT6 1004 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 DUSP16Q9BY84 665 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 DPEP3Q9H4B8 488 aa16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 HMX1Q9NP08 348 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-209ENST00000494080 HMGXB4Q9UGU5 601 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms