RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 SLC39A10Q9ULF5 831 aa18.27■□□□□ 0.52
PDLIM7-207ENST00000486828 FNDC1Q4ZHG4 1894 aaPredicted RBP18.27■□□□□ 0.52
PDLIM7-207ENST00000486828 HTTP42858 3142 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 MSI1O43347 362 aaKnown RBP18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 TRIM13O60858 407 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 CIB2O75838 187 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 HSPA4LO95757 839 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 MT-CYBP00156 380 aaPredicted RBP18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 CPOXP36551 454 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 GRIK1P39086 918 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 VHLP40337 213 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 TRMT5Q32P41 509 aaKnown RBP18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 NAPRTQ6XQN6 538 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 SCD5Q86SK9 330 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 PLCD3Q8N3E9 789 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 RDH11Q8TC12 318 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 ZNF419Q96HQ0 510 aaPredicted RBP18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 PPP1R2P1Q96PQ5 205 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 PCDHB8Q9UN66 801 aa18.27■□□□□ 0.51
PDLIM7-207ENST00000486828 F8W810 466 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 ATP6V1C1P21283 382 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 PGFP49763 221 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 GEMP55040 296 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 SESN3P58005 492 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 YWHAHQ04917 246 aaPredicted RBP18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 TSNAXIP1Q2TAA8 658 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 C6orf163Q5TEZ5 329 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 AFMIDQ63HM1 303 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 DENND5AQ6IQ26 1287 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 CNTN4Q8IWV2 1026 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 ZNF781Q8N8C0 355 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 IPMKQ8NFU5 416 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 FICDQ9BVA6 458 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 C1QTNF1Q9BXJ1 281 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 OXCT2Q9BYC2 517 aaPredicted RBP18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 TLK1Q9UKI8 766 aa18.26■□□□□ 0.51
PDLIM7-207ENST00000486828 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 CCDC78A2IDD5 438 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 INPPL1O15357 1258 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 TBX10O75333 385 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 ACADSP16219 412 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 KCNA10Q16322 511 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 UGP2Q16851 508 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 VWA5B1Q5TIE3 1220 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 SNX30Q5VWJ9 437 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 TIGD7Q6NT04 549 aaPredicted RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 EPGNQ6UW88 154 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 RAPH1Q70E73 1250 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 ZNF598Q86UK7 904 aaKnown RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 LCA5Q86VQ0 697 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 PPHLN1Q8NEY8 458 aaKnown RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 PTCD2Q8WV60 388 aaKnown RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 DNAJC9Q8WXX5 260 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 CLPTM1LQ96KA5 538 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 OXSMQ9NWU1 459 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 SLC7A8Q9UHI5 535 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 GABRQQ9UN88 632 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 MEI4A8MW99 385 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 NVLO15381 856 aaKnown RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 ADRA1AP35348 466 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 COPAP53621 1224 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 NRG1Q02297 640 aaPredicted RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 USP10Q14694 798 aaKnown RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 POTEHQ6S545 545 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 ZYG11AQ6WRX3 759 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 RIPOR1Q6ZS17 1223 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 RTL3Q8N8U3 475 aaKnown RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 ZNF333Q96JL9 665 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 TSNARE1Q96NA8 513 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 PANX3Q96QZ0 392 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 GATA5Q9BWX5 397 aaPredicted RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 ACE2Q9BYF1 805 aaPredicted RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 TASP1Q9H6P5 420 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 COG4Q9H9E3 785 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 MRM3Q9HC36 420 aaKnown RBP18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 ENTPD7Q9NQZ7 604 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 NDFIP2Q9NV92 336 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 NMRK1Q9NWW6 199 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 ZNF212Q9UDV6 495 aa18.25■□□□□ 0.51
PDLIM7-207ENST00000486828 KCNU1A8MYU2 1149 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 E9PAM4 449 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 AHSGP02765 367 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 HLA-DQB2P05538 268 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 HSPA1AP0DMV8 641 aaKnown RBP18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 HSPA1BP0DMV9 641 aaKnown RBP18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 DNAJB1P25685 340 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 GABRB3P28472 473 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 TUBP50607 506 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 ACTR3P61158 418 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 TRIM32Q13049 653 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 USP4Q13107 963 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 SLC12A1Q13621 1099 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 POU6F1Q14863 301 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 MUM1Q2TAK8 710 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 CFAP157Q5JU67 520 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 FAM26DQ5JW98 314 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 LRRC74BQ6ZQY2 392 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 LRRC49Q8IUZ0 686 aa18.24■□□□□ 0.51
PDLIM7-207ENST00000486828 KLHDC9Q8NEP7 349 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms