RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 NKD2Q969F2 451 aaPredicted RBP11.18□□□□□ -0.62
HDAC6-228ENST00000486227 MPP6Q9NZW5 540 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 TRAV19A0A0A6YYK7 116 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 TBL3Q12788 808 aaKnown RBP11.18□□□□□ -0.62
HDAC6-228ENST00000486227 PTP4A2Q12974 167 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 HECTD3Q5T447 861 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 TTC33Q6PID6 262 aaPredicted RBP11.18□□□□□ -0.62
HDAC6-228ENST00000486227 EGFL6Q8IUX8 553 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 DEFB107AQ8IZN7 70 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 CERS2Q96G23 380 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 SPATA17Q96L03 361 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 ZNF317Q96PQ6 595 aaPredicted RBP11.18□□□□□ -0.62
HDAC6-228ENST00000486227 LPIN3Q9BQK8 851 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 POLR1EQ9GZS1 481 aaKnown RBP11.18□□□□□ -0.62
HDAC6-228ENST00000486227 LRRC4CQ9HCJ2 640 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 RGS18Q9NS28 235 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 TCRBV9S1A1TA0A576 114 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 PAPSS1O43252 624 aaPredicted RBP11.17□□□□□ -0.62
HDAC6-228ENST00000486227 MSI1O43347 362 aaKnown RBP11.17□□□□□ -0.62
HDAC6-228ENST00000486227 H2AFYO75367 372 aaKnown RBP11.17□□□□□ -0.62
HDAC6-228ENST00000486227 RGS20O76081 388 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 CD86P42081 329 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 ARHGDIAP52565 204 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 LPCAT2Q7L5N7 544 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 OR6Y1Q8NGX8 325 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 NPLOC4Q8TAT6 608 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 THAP1Q9NVV9 213 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 SORCS3Q9UPU3 1222 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 MYBPHLA2RUH7 354 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 TBC1D3BA6NDS4 549 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 TPP1O14773 563 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 CLASP2O75122 1294 aaKnown RBP11.17□□□□□ -0.62
HDAC6-228ENST00000486227 RPL5P46777 297 aaKnown RBP11.17□□□□□ -0.62
HDAC6-228ENST00000486227 SERPINH1P50454 418 aaKnown RBP11.17□□□□□ -0.62
HDAC6-228ENST00000486227 PLK1P53350 603 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 NME5P56597 212 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 TRIM16LQ309B1 348 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 CDHR5Q9HBB8 845 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 CRYL1Q9Y2S2 319 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 C16orf96A6NNT2 1141 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 TPBGLP0DKB5 382 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 ITGB6P18564 788 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 KCNK10P57789 538 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 MAXP61244 160 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 STX5Q13190 355 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 CCDC153Q494R4 210 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 OTOAQ7RTW8 1153 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 EFL1Q7Z2Z2 1120 aaKnown RBP11.17□□□□□ -0.62
HDAC6-228ENST00000486227 MON1AQ86VX9 555 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 CROCCP3Q8IVE0 287 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 SKA1Q96BD8 255 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 TWNKQ96RR1 684 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 ZYG11BQ9C0D3 744 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 DENND2DQ9H6A0 471 aaPredicted RBP11.17□□□□□ -0.62
HDAC6-228ENST00000486227 TLE6Q9H808 572 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 NMRAL1Q9HBL8 299 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 ZNF229Q9UJW7 825 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 ITGB1BP2Q9UKP3 347 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 SLC45A1Q9Y2W3 748 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 TELO2Q9Y4R8 837 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 A0A1W2PPM1 405 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 C2CD4BA6NLJ0 364 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 GLUD1P00367 558 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 NEK2P51955 445 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 RABGGTBP53611 331 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 PLIN5Q00G26 463 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 PCID2Q5JVF3 399 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 CLNKQ7Z7G1 428 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 TERB1Q8NA31 727 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 ASPSCR1Q9BZE9 553 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 RNF39Q9H2S5 420 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 APPL1Q9UKG1 709 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 NCKAP1Q9Y2A7 1128 aa11.17□□□□□ -0.62
HDAC6-228ENST00000486227 ARL5CA6NH57 179 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 OR6C75A6NL08 312 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 TLR5O60602 858 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 HSPA1AP0DMV8 641 aaKnown RBP11.16□□□□□ -0.62
HDAC6-228ENST00000486227 HSPA1BP0DMV9 641 aaKnown RBP11.16□□□□□ -0.62
HDAC6-228ENST00000486227 OR1D2P34982 312 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 PTGIRP43119 386 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 DUSP4Q13115 394 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 SGCGQ13326 291 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 DDX39BQ13838 428 aaKnown RBP11.16□□□□□ -0.62
HDAC6-228ENST00000486227 RIPOR1Q6ZS17 1223 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 TPGS1Q6ZTW0 290 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 DHDDSQ86SQ9 333 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 KIAA2013Q8IYS2 634 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 CRYGNQ8WXF5 182 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 SUSD6Q92537 303 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 ZNF333Q96JL9 665 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 FAR2Q96K12 515 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 PCYT2Q99447 389 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 CCDC90BQ9GZT6 254 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 COG4Q9H9E3 785 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 CLIC5Q9NZA1 410 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 DNMT3LQ9UJW3 386 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 GSC2O15499 205 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 ALDH1A2O94788 518 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 GPD2P43304 727 aa11.16□□□□□ -0.62
HDAC6-228ENST00000486227 SH3PXD2AQ5TCZ1 1133 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms