RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RETP07949 1114 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 GABRG2P18507 467 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 NFKBIAP25963 317 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 CTNNA2P26232 953 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 CD6P30203 668 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 CDC25BP30305 580 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 ARHGAP25P42331 645 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 STK19P49842 368 aaPredicted RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 GDF10P55107 478 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 YBEYP58557 167 aaPredicted RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 RHOAP61586 193 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 NRG1Q02297 640 aaPredicted RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 ZBTB16Q05516 673 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 ITKQ08881 620 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 DMWDQ09019 674 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 SCAPQ12770 1279 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 KIF5AQ12840 1032 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 SRSF5Q13243 272 aaKnown RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 ELAVL3Q14576 367 aaKnown RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 ZNF235Q14590 738 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 DLG2Q15700 870 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 HNRNPA1L2Q32P51 320 aaKnown RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 PARP15Q460N3 678 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 ALFQ53S48 1182 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 SLC45A4Q5BKX6 768 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 KIAA1211LQ6NV74 962 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 RFX8Q6ZV50 586 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 DAAM2Q86T65 1068 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 ADIPOR2Q86V24 386 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 MMAAQ8IVH4 418 aaKnown RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 TMEFF1Q8IYR6 380 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 PYROXD2Q8N2H3 581 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 ATPAF2Q8N5M1 289 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 LZTR1Q8N653 840 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 RTL3Q8N8U3 475 aaKnown RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 KDM1BQ8NB78 822 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 ZBTB44Q8NCP5 570 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 CCDC112Q8NEF3 446 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 OR7D4Q8NG98 312 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 SLC35G2Q8TBE7 412 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 CENPIQ92674 756 aaPredicted RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 TTC17Q96AE7 1141 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 BTBD6Q96KE9 485 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 CHP1Q99653 195 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 EPC1Q9H2F5 836 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 ZDHHC6Q9H6R6 413 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 POLR3BQ9NW08 1133 aaPredicted RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 TMEM248Q9NWD8 314 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 FBXL12Q9NXK8 326 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 DDX56Q9NY93 547 aaKnown RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 UBA2Q9UBT2 640 aaPredicted RBP8.21□□□□□ -1.1
USP40-216ENST00000485943 SUSD2Q9UGT4 822 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 VPS51Q9UID3 782 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 INTUQ9ULD6 942 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 PCDHA13Q9Y5I0 950 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 MUC6Q6W4X9 2439 aa8.21□□□□□ -1.1
USP40-216ENST00000485943 TBC1D3DA0A087WVF3 549 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TBC1D3IA0A087WXS9 549 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TBC1D3EA0A087X179 549 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TBC1D3KA0A087X1G2 549 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 MACROD2A1Z1Q3 448 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TBC1D3FA6NER0 549 aaPredicted RBP8.2□□□□□ -1.1
USP40-216ENST00000485943 SHISA7A6NL88 538 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 DRGXA6NNA5 263 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TBC1D3LB9A6J9 549 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 RASA4BC9J798 803 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 KRIT1O00522 736 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 KHNYNO15037 678 aaKnown RBP8.2□□□□□ -1.1
USP40-216ENST00000485943 RASA4O43374 803 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 ADAM23O75077 832 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 SIN3BO75182 1162 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 LRCH4O75427 683 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 PALMO75781 387 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 PROSCO94903 275 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 FSBPO95073 299 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 NDUFA10O95299 355 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TBC1D3HP0C7X1 549 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 KRT10P13645 584 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 SLC8A1P32418 973 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 SLC1A1P43005 524 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 CTSOP43234 321 aaPredicted RBP8.2□□□□□ -1.1
USP40-216ENST00000485943 SERPINB4P48594 390 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 RENBPP51606 427 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 EPHA4P54764 986 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 MESP2Q0VG99 397 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 PDK2Q15119 407 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TEAD4Q15561 434 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TBC1D3GQ6DHY5 549 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TBC1D3CQ6IPX1 549 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 CXorf57Q6NSI4 855 aaKnown RBP8.2□□□□□ -1.1
USP40-216ENST00000485943 TRNP1Q6NT89 227 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 FBXL19Q6PCT2 694 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 LINGO4Q6UY18 593 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 Q6ZVU0 165 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 BZW1Q7L1Q6 419 aaKnown RBP8.2□□□□□ -1.1
USP40-216ENST00000485943 RASSF3Q86WH2 238 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 RFX6Q8HWS3 928 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 RHOT1Q8IXI2 618 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 KIAA2013Q8IYS2 634 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TBC1D3Q8IZP1 549 aaPredicted RBP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms