RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 ISG20Q96AZ6 181 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-207ENST00000481335 LRIG1Q96JA1 1093 aa12.4□□□□□ -0.42
SQSTM1-207ENST00000481335 ERGIC2Q96RQ1 377 aa12.4□□□□□ -0.42
SQSTM1-207ENST00000481335 CCDC86Q9H6F5 360 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-207ENST00000481335 ATP13A1Q9HD20 1204 aa12.4□□□□□ -0.42
SQSTM1-207ENST00000481335 MPP6Q9NZW5 540 aa12.4□□□□□ -0.42
SQSTM1-207ENST00000481335 IL36AQ9UHA7 158 aa12.4□□□□□ -0.42
SQSTM1-207ENST00000481335 LIMA1Q9UHB6 759 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-207ENST00000481335 ZFYVE26Q68DK2 2539 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 ZSCAN5CA6NGD5 496 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 C2CD4BA6NLJ0 364 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 CBX4O00257 560 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 KPNA3O00505 521 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 SRGAP2O75044 1071 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 ZMPSTE24O75844 475 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 MBD3O95983 291 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 CCDC172P0C7W6 258 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 KRT3P12035 628 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 RHOQP17081 205 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 RRM1P23921 792 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 ITGB7P26010 798 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 ADRA1BP35368 520 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 NEK3P51956 506 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 METAP1P53582 386 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 COPB1P53618 953 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 AIF1P55008 147 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 TAS2R38P59533 333 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 SCAPQ12770 1279 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 SYCP1Q15431 976 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 SHBQ15464 509 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 C2CD6Q53TS8 623 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 SFMBT2Q5VUG0 894 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 ERN2Q76MJ5 926 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 TMPRSS12Q86WS5 348 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 HORMAD1Q86X24 394 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 GPT2Q8TD30 523 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 SLC20A1Q8WUM9 679 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 RXFP2Q8WXD0 754 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 CENPIQ92674 756 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 IFT43Q96FT9 208 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 C11orf70Q9BRQ4 267 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 MAGEH1Q9H213 219 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 NLRC4Q9NPP4 1024 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 FANCLQ9NW38 375 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 TMEM248Q9NWD8 314 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 OR12D3Q9UGF7 316 aa12.39□□□□□ -0.43
SQSTM1-207ENST00000481335 KCNK3O14649 394 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 ENC1O14682 589 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 RIOK3O14730 519 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 EPHB6O15197 1021 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 SMAD6O43541 496 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 AP1G1O43747 822 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 BNIP3LO60238 219 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 RFPL3O75679 317 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 LDOC1O95751 146 aaPredicted RBP12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 DESP17661 470 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 CHRNB2P17787 502 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 HNRNPA2B1P22626 353 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 AKT2P31751 481 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 HNF1BP35680 557 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 NUMBP49757 651 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 ARF5P84085 180 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 ATP11AP98196 1134 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 IL9RQ01113 521 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 C1QBPQ07021 282 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 PTP4A2Q12974 167 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 CCDC14Q49A88 953 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 KIAA1161Q6NSJ0 714 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 DPY19L3Q6ZPD9 716 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 NLRP14Q86W24 1093 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 DCP2Q8IU60 420 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 EMC1Q8N766 993 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 OR7D4Q8NG98 312 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 CASKIN2Q8WXE0 1202 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 RAB7BQ96AH8 199 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 TBC1D31Q96DN5 1066 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 CNDP2Q96KP4 475 aaKnown RBP12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 HEPHQ9BQS7 1158 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 SELENOOQ9BVL4 669 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 TMPRSS4Q9NRS4 437 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 DONSONQ9NYP3 566 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 ADAM22Q9P0K1 906 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 HPCAL4Q9UM19 191 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 MYO6Q9UM54 1294 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 SNX10Q9Y5X0 201 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 WASF2Q9Y6W5 498 aa12.38□□□□□ -0.43
SQSTM1-207ENST00000481335 ANKRD62A6NC57 917 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 SIGLEC16A6NMB1 481 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 K7ERQ8 282 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 PLK4O00444 970 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 WNT9AO14904 365 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 RAMP2O60895 175 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 ZNF821O75541 412 aaPredicted RBP12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 LEFTY1O75610 366 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 LRIG2O94898 1065 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 MAT2AP31153 395 aaKnown RBP12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 L1CAMP32004 1257 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 HTR7P34969 479 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 KLK7P49862 253 aa12.37□□□□□ -0.43
SQSTM1-207ENST00000481335 RPS21P63220 83 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms