RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	RIPK2	O43353	540 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	USP12	O75317	370 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	PENK	P01210	267 aa	Predicted RBP	11.41	□□□□□ -0.58
APTX-223	ENST00000479656	CD70	P32970	193 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	SARNP	P82979	210 aa	Known RBP	11.41	□□□□□ -0.58
APTX-223	ENST00000479656	ARF5	P84085	180 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	CDK16	Q00536	496 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	LMAN2	Q12907	356 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	TMCO4	Q5TGY1	634 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	KCTD11	Q693B1	232 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	TANGO2	Q6ICL3	276 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	LINGO4	Q6UY18	593 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	PPP1R21	Q6ZMI0	780 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	CEP128	Q6ZU80	1094 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	ZNF534	Q76KX8	674 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.41	□□□□□ -0.58
APTX-223	ENST00000479656	RELL1	Q8IUW5	271 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	OR2W6P	Q8NHA6	318 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	BPIFB1	Q8TDL5	484 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	OSCP1	Q8WVF1	389 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	ZNF599	Q96NL3	588 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	MYADM	Q96S97	322 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	EIF2B3	Q9NR50	452 aa	Known RBP	11.41	□□□□□ -0.58
APTX-223	ENST00000479656	PIH1D1	Q9NWS0	290 aa	Known RBP	11.41	□□□□□ -0.58
APTX-223	ENST00000479656	NINJ2	Q9NZG7	142 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	UBA2	Q9UBT2	640 aa	Predicted RBP	11.41	□□□□□ -0.58
APTX-223	ENST00000479656	PLAA	Q9Y263	795 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	REV3L	O60673	3130 aa		11.41	□□□□□ -0.58
APTX-223	ENST00000479656	MYO18A	Q92614	2054 aa	Known RBP	11.41	□□□□□ -0.58
APTX-223	ENST00000479656		E7ESA3	106 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	MUSK	O15146	869 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	ZMPSTE24	O75844	475 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	ACSL3	O95573	720 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	AP2A1	O95782	977 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	TTC4	O95801	387 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	CD160	O95971	181 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	TYR	P14679	529 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	POU3F3	P20264	500 aa	Predicted RBP	11.4	□□□□□ -0.58
APTX-223	ENST00000479656	IFNAR2	P48551	515 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	NIPAL4	Q0D2K0	466 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	DHCR24	Q15392	516 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	CYTH1	Q15438	398 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	SPDYC	Q5MJ68	293 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	ALS2CL	Q60I27	953 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	RNF43	Q68DV7	783 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	ASTL	Q6HA08	431 aa	Predicted RBP	11.4	□□□□□ -0.58
APTX-223	ENST00000479656	IGDCC3	Q8IVU1	814 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	AGGF1	Q8N302	714 aa	eCLIP	11.4	□□□□□ -0.58
APTX-223	ENST00000479656	NAT16	Q8N8M0	369 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	FBXO36	Q8NEA4	188 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	LRCH3	Q96II8	777 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	ZFYVE19	Q96K21	471 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	FRMD8	Q9BZ67	464 aa	Predicted RBP	11.4	□□□□□ -0.58
APTX-223	ENST00000479656	SLC25A51	Q9H1U9	297 aa		11.4	□□□□□ -0.58
APTX-223	ENST00000479656	INTS6	Q9UL03	887 aa	Known RBP	11.4	□□□□□ -0.58
APTX-223	ENST00000479656	AAR2	Q9Y312	384 aa	Known RBP	11.4	□□□□□ -0.58
APTX-223	ENST00000479656	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	11.4	□□□□□ -0.58
APTX-223	ENST00000479656	PRRC2B	Q5JSZ5	2229 aa	Known RBP	11.4	□□□□□ -0.58
APTX-223	ENST00000479656	GOLGA6B	A6NDN3	693 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	AGPS	O00116	658 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	EIF3H	O15372	352 aa	Known RBP eCLIP	11.4	□□□□□ -0.59
APTX-223	ENST00000479656	GJB3	O75712	270 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	SUN1	O94901	812 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	FCAR	P24071	287 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	HLA-F	P30511	346 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	GBP2	P32456	591 aa	Predicted RBP	11.4	□□□□□ -0.59
APTX-223	ENST00000479656	ELK3	P41970	407 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	DSC2	Q02487	901 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	TNK2	Q07912	1038 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	ZNF235	Q14590	738 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	EML3	Q32P44	896 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	LRRC8B	Q6P9F7	803 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	KDELC2	Q7Z4H8	507 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	PRPF39	Q86UA1	669 aa	Known RBP	11.4	□□□□□ -0.59
APTX-223	ENST00000479656	OR52K1	Q8NGK4	314 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	PYROXD1	Q8WU10	500 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	ASIC4	Q96FT7	647 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	MSLNL	Q96KJ4	702 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	LMLN	Q96KR4	655 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	RIPOR3	Q96MK2	946 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	APOL2	Q9BQE5	337 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	WDR83	Q9BRX9	315 aa	Known RBP	11.4	□□□□□ -0.59
APTX-223	ENST00000479656	POMK	Q9H5K3	350 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	TRPV4	Q9HBA0	871 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	LRRC4C	Q9HCJ2	640 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	ZFP14	Q9HCL3	533 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	ABCB8	Q9NUT2	735 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	VPS51	Q9UID3	782 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	NFS1	Q9Y697	457 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	CHD5	Q8TDI0	1954 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	PDE4DIP	Q5VU43	2346 aa		11.4	□□□□□ -0.59
APTX-223	ENST00000479656	GOLGA6C	A6NDK9	693 aa		11.39	□□□□□ -0.59
APTX-223	ENST00000479656	ERI2	A8K979	691 aa	Known RBP	11.39	□□□□□ -0.59
APTX-223	ENST00000479656	PSMD3	O43242	534 aa		11.39	□□□□□ -0.59
APTX-223	ENST00000479656	PMPCB	O75439	489 aa		11.39	□□□□□ -0.59
APTX-223	ENST00000479656	ANXA9	O76027	345 aa		11.39	□□□□□ -0.59
APTX-223	ENST00000479656	MT-CO1	P00395	513 aa		11.39	□□□□□ -0.59
APTX-223	ENST00000479656	AGT	P01019	485 aa		11.39	□□□□□ -0.59
APTX-223	ENST00000479656	SHBG	P04278	402 aa		11.39	□□□□□ -0.59
APTX-223	ENST00000479656	GOLGA6D	P0CG33	693 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms